Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1378 ATGGGACTCTGTCATGGAAAACCCATTGAAACTTCACAAAAAGAAAGAGAAATTTCATCTTTCCCAAGTGAAGAAATTCTTCAACTTCCACCACCATCAAGCTCTCATCATCATCATCATGCAAAAACTAAATCATCTTCAAAGTTTCCATTTTTCAGTCCAAGTCCATTACCAAGTTTCTTCAAAAACTCACCTGCAAATTCAAATTCAAATTCTAGTGTGAGTTCAACTCCTCTTCGGATCTTTAAACGACCCTTTCCTCCTCCTTCTCCGGCAAAGCACATTCGAGCGCTGCTCGCGAGACGCCACGGCTCTGTGAAGCCTAATGAAGCCACAATTCCTGAAGGGAGTGAGTGTGAAGTTGGGTTGGATAAAAGTTTTGGTTTTTCTAAGCATTTTGTGACAAATTTTGAGATTGGAGATGAAGTTGGTCGTGGCCATTTTGGTTATACTTGTTATGCTAAGGGTAAAAAAGGAGGCTTTAAGGGTCTTGATGTTGCTGTTAAAGTCATTCCTAAATCTAAGATGACAACGGCAATTGCGATAGAGGATGTAAGAAGAGAAGTGAAGATATTGCGAGCTCTAACCGGTCATAAGAATTTAGTACAATTCTATGAAGCCTATGAAGACGACGAAAATGTTTATGTAGTTATGGAATTGTGCAAAGGAGGTGAATTGCTAGATAAGATTCTTTCCAGGGGCGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTACAGGGCGTTGTACACCGTGATCTCAAGCCAGAGAATTTTCTTTTTAGTTCCGAGGATGAAAATTCCGCACTGAAGGCAATTGACTTTGGACTCTCTGATTATGTAAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTGTTATGTGGAAGCCGACCTTTTTGGGCAAGGACAGAATCCGGCATATTTCGAGCTGTTCTTAAGGCAGACCCGAGTTTCGATGAAGCTCCTTGGCCTTCTTTATCGGCTGATGCAAAAGATTTTGTGAAGAGGCTGTTGAATAAAGACTATCGTAAAAGACTAACTGCAGCTCAGGCTCTCGGTCATCCATGGCTGGTGAACCACTTAGAGGATGTAAAGATACCGTTTGATATGATAATCCACAAGCTCATCAAAACTTACATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCCAAGACATTGACATTGGTGCAGTTAGCATATCTCAAAGAACAATTTACTCTTTTAGGGCCAAACAAAAGTGGACTAATCTCTATGCAGAACTTCAAGACGGCTGTTTTAAAGAGCGCCACTGATGCCTCAAAGGATTCACGAGTCTTAGATTATGTGAACACGGTTAGCTCAATCCAATATCGAAAATTAGATTTTGAGGAATTTTGTGCTGCAGCTATAAGTGTCCATCAACTGGAGGGAATGGATACGTGGGAACAACATGCAAGGCGTGCTTACGAGCTGTTTGAAAAGGATGGAAATAGACCAATTATGATCGAAGAGCTTGCCTCGGAACTCGGGCTTAGCCCCTCAGTACCTATCCACGTGGTACTCCAAGATTGGATAAGACACTCAGATGGAAAGCTTAGTTTCTTAGGATTTGTCAGACTCCTGCACGGAGTTTCTTCTCGCACATTTCACAAGGCTTGA 1776 0.4127 MGLCHGKPIETSQKEREISSFPSEEILQLPPPSSSHHHHHAKTKSSSKFPFFSPSPLPSFFKNSPANSNSNSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFVTNFEIGDEVGRGHFGYTCYAKGKKGGFKGLDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVYVVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSALKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALGHPWLVNHLEDVKIPFDMIIHKLIKTYICSSSLRKSALGALAKTLTLVQLAYLKEQFTLLGPNKSGLISMQNFKTAVLKSATDASKDSRVLDYVNTVSSIQYRKLDFEEFCAAAISVHQLEGMDTWEQHARRAYELFEKDGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFHKA* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1378 591 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Tpr6g1378 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Tpr6g1378 591 PANTHER CDPK-RELATED KINASE 1 37 586 - -
Tpr6g1378 591 Gene3D - 419 509 - -
Tpr6g1378 591 SUPERFAMILY Protein kinase-like (PK-like) 126 427 IPR011009 -
Tpr6g1378 591 CDD STKc_CAMK 136 398 - -
Tpr6g1378 591 Gene3D - 425 579 - -
Tpr6g1378 591 MobiDBLite consensus disorder prediction 1 48 - -
Tpr6g1378 591 ProSiteProfiles Protein kinase domain profile. 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1378 591 Gene3D Phosphorylase Kinase; domain 1 130 226 - -
Tpr6g1378 591 SUPERFAMILY EF-hand 429 582 IPR011992 -
Tpr6g1378 591 Pfam Protein kinase domain 138 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1378 591 SMART serkin_6 137 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1378 591 Gene3D Transferase(Phosphotransferase) domain 1 227 418 - -
Tpr6g1378 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1378 Tpr-Chr6 14792371 14798616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1378 1 587 EF-hand Containing Proteins AT3G50530 66.773 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr6g1378 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1378 - - gmx:100803625 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1378 6 14792371 14798616 Tpr6g1378 6 14792371 14798616 ECH