Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1375 ATGCTTCATCAACATCATCAACAACAGATTCAGAATAATAATATTGAAATGGAAAATAACTCAGAACTCTTTCAATTCATTGTTGCTAACAACCCTTCATTCTTTGACTATTCAAATCCTACTATGATGCAACAAAGTTTATGTAGTTCTTCTGATAATAATAACTATTACCACCCCTTTGAAGCTTCTGAAATTACTGATACACCCTCCCAACAAGATAGAGCTTTAGCTGCTATGAAGAATCATAAGGAAGCTGAGAAGAGAAGGAGAGAGAGAATCAATTCTCATCTTGATCATCTTCGCACTCTTCTTCCTTGCAACTCCAAGACGGATAAGGCCTCACTTCTTGCTAAAGTTGTCGAGCGAGTGAAAGAATTAAAGCAACAAACATCTGAAATCACAGAAATCGAAACAGTTCCGTCTGAAACCGATGAAATAACCGTCATCTCAGCTGGTGGAGACATCACAGGAGAAGGCAAACTAATATTCAAAGCTTCATTATGTTGCGAGGATCGTTCTGACCTAATCCCAGACCTAATCGAAATCCTCAAATCTCTTCGCCTCAAGACTATCAAAGCCGAAATTTCCACACTTGGCGGAAGAACGCGGAATGTTCTTGTTGTTGCTGCTGATAAAGAACATAATAGCATTGAATCAATTCATTTTCTTCAGAATTCGCTTAGGTCTTTGTTGGATAGATCTAGTAATTGTAATGATAGGTCTAAACGGCGTCGTGGGTTGGATCGAAGAATGATGCCTTAA 762 0.3845 MLHQHHQQQIQNNNIEMENNSELFQFIVANNPSFFDYSNPTMMQQSLCSSSDNNNYYHPFEASEITDTPSQQDRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVERVKELKQQTSEITEIETVPSETDEITVISAGGDITGEGKLIFKASLCCEDRSDLIPDLIEILKSLRLKTIKAEISTLGGRTRNVLVVAADKEHNSIESIHFLQNSLRSLLDRSSNCNDRSKRRRGLDRRMMP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1375 253 SMART finulus 83 132 IPR011598 GO:0046983
Tpr6g1375 253 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 19 252 - -
Tpr6g1375 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Tpr6g1375 253 PANTHER TRANSCRIPTION FACTOR BHLH30 19 252 IPR045847 GO:0003700|GO:0006355
Tpr6g1375 253 MobiDBLite consensus disorder prediction 234 253 - -
Tpr6g1375 253 CDD bHLH_AtAIG1_like 72 150 - -
Tpr6g1375 253 Gene3D - 72 137 IPR036638 GO:0046983
Tpr6g1375 253 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Tpr6g1375 253 MobiDBLite consensus disorder prediction 235 253 - -
Tpr6g1375 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1375 Tpr-Chr6 14750836 14752765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1375 23 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 60.092 1.72e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1375 HLH 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1375 - K22484 gmx:100802566 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1375 6 14750836 14752765 Tpr6g1375 6 14750836 14752765 ECH