LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1368	ATGAACATATTTACCCTCTTACTAATAGTAGTAATTTCCACAGCTACTATTATTAATGCACAAGAATACAATGAAAAAAATTACATGTCCGATTTATTACAATCACTAACTCATACTCCCTCTACCTGGTCTAACAAAATTCACCACTGCAAATGGAAAGGCATAACTTGCAACTCAACTACTCAAGCTGTTATCTCCATCATCCTCTCATCAAATTCACTCACCGGCACACTCCCTTCGAATATCGACACTCTAACTAATCTCACTCACATCGATCTCCACAACAACTCACTCAATGGTCCTTTACCCGATTTTAGTAACCTTGCCTTGCTCCAAACTATTTCCCTTGGTCACAATAACTTCACGTCCATCCCCGACGATACATTTCGATACTTATCTGATCTCAGAGCTCTTAACCTTAGTAATAACATGAATCTCTCCCACTGGGAATTTCCTACCAATTATTTACCTTACTCCGGTTCTTTGCATACTCTTGATTTCGAAGCTACGAATATGATAGGCTCATTTTCTGATCCTAATATATTCAATTCGTATCAAAATTTGCAAACTTTGATTCTTTCTAACAACCAAATAAAAGGAGTTCTACCCGCGTCTCTCGGGAAATCTGGAGTAAGATATTTACGGCTTGATAATAATGAGTTTGTGGGCAAAATTGACATTCTATCAACAATGACCAATTTGTCTCAAGCATGGCTTCACGATAACAGTTTCAGCGGTCAAATTCCAAACATGTCCAAATGTACTAATTTGTCTGATTTGCAGCTTCAGTCGAATACTTTAACTGGTTTGGTTCCACCTTCATTACTTTCTCTTCCTAGCTTGAAAATTATCAATTTGAAACAAAATGGGCTACAAGGACCGTTACCTGAGTTTCGCAAGGGTGTTAACGCAACTTTGGAAACAAATAACTTTTGTCGAAGCGATTTTGGACCTTGTGATTCTCAGGTTACGCTTTTATATGAAATTTTTGAAGATCTTGGGTCTCCTCAATATTTGGCAACTCAAGGGAACAATGTTTGTACCGGAGGGCAGTGGCTCCAGATGATGCCCAATCAAGTACAGATTAAGTGTGAAAGAGGGAAAATTGTTAGTTTTATGATCTCCTATGTTAATACTTTACTTGATGGTAGAAGTGGAACCATCTCTCCCAAATTTTCCAATTTAACAAGTTTGGTGAACTTGACTCTTGTTGGAAATAATTTGACAGGTCCAATACCACAAAGTCTTACAACTTTGCCTCAACTTCAACTTCTTGATGTTTCTAATAATAATCTTTCAGGATTTATTCCAAAATTTTCATCCAAGGTTAAGTTAAATATCACGAGCAATAATTTGCTAGGGAAAAATATGTCTAGACAAGGTGGAGGTGAAAACGCAACCACTGCAGGTGATGCTCAAACTGGAAGTTCATCTAAAGCAGCAAACCTTAAACCTTTTTGGATTGCAGGGGCCTTGATGTTTGGTGTTGCATTTGTCATACTTATTGTGTTGGTTTGTAAACGCAAGAGGTATCATATTTTAGTAAAAAGGTGGCTCTTCAAGAAAACAAAATCTATTGACTACAATGTGGAAGATTTCATGCAAAGTTATAATTTGTCAGTGCCAATTAAGCAATATAGATATTCAGAAGTGAAAAGAATGACAAACTCATTCCGGGACAAATTAGGTCAAGGAGGATATGGTGTTGTTTACAAAGCAAGTTTACCTGATGGACGTCAAGTGGCGGTGAAAGTGATAAACGAGTCGAAGGGAAATGGAGAAGAATTCATAAATGAAGTAGCTAGCATTAGTAGAACTTCACATGTGAACATTGTTTCACTTTTGGGTTTTTCCTATGAGAACAAAAGAGCATTAATATATGAATTCATGTCCAAAGGATCATTGGATAATTTTATCCTTAAAAGTGGATTTTCTGATGCTATTTGTAGTTTGGATTGGAACACAATGTACAAAATTGCAATTGGCATTGCTCGGGGACTAGAATACTTGCATGAAGGATGTATTTCAAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGTCCAAAAATCTCTGATTTTGGACTAGCTAAAATATGCCAAAGGAATAATAGTATTGTGTCTATGCTAGGCACAAGAGGAACCATAGGATACATAGCACCAGAAGTATTTAGCCGAACGTTTGGTCAAGTTTCTCACAAGTCTGATGTATACAGTTATGGTATGTTAATTCTAGAAATGATTGGAGGAAGAAAGAATTATGACACTGGAAGTTCATGTACGTCTGAAATGTACTTTCCAGACTGGATTTATAAGGATCTCGAACAAGGTAACATCCTTGAGGGTTGTTTGTCAAATTCCGAGGAAGAAAATGATATGGTGAAAAAGATTACCATGGTAAGTCTATGGTGCATTCAAACAAATCCATCAGATAGGCCATCAATGAGTAGAGTAATAGAAATGTTGCAAGGACCACTTCAGTCAATATCATGTCCTCCAAAGCCTTTCTTATATTCTCCTGAAATGTCATCATTACAAACTTCATATGTGTCTTCCAACAATTTGCTAGAGACAAATTCAGAAAGACATAGTGAAAATGTGACTGTAATGTAA	2634	0.3652	MNIFTLLLIVVISTATIINAQEYNEKNYMSDLLQSLTHTPSTWSNKIHHCKWKGITCNSTTQAVISIILSSNSLTGTLPSNIDTLTNLTHIDLHNNSLNGPLPDFSNLALLQTISLGHNNFTSIPDDTFRYLSDLRALNLSNNMNLSHWEFPTNYLPYSGSLHTLDFEATNMIGSFSDPNIFNSYQNLQTLILSNNQIKGVLPASLGKSGVRYLRLDNNEFVGKIDILSTMTNLSQAWLHDNSFSGQIPNMSKCTNLSDLQLQSNTLTGLVPPSLLSLPSLKIINLKQNGLQGPLPEFRKGVNATLETNNFCRSDFGPCDSQVTLLYEIFEDLGSPQYLATQGNNVCTGGQWLQMMPNQVQIKCERGKIVSFMISYVNTLLDGRSGTISPKFSNLTSLVNLTLVGNNLTGPIPQSLTTLPQLQLLDVSNNNLSGFIPKFSSKVKLNITSNNLLGKNMSRQGGGENATTAGDAQTGSSSKAANLKPFWIAGALMFGVAFVILIVLVCKRKRYHILVKRWLFKKTKSIDYNVEDFMQSYNLSVPIKQYRYSEVKRMTNSFRDKLGQGGYGVVYKASLPDGRQVAVKVINESKGNGEEFINEVASISRTSHVNIVSLLGFSYENKRALIYEFMSKGSLDNFILKSGFSDAICSLDWNTMYKIAIGIARGLEYLHEGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQRNNSIVSMLGTRGTIGYIAPEVFSRTFGQVSHKSDVYSYGMLILEMIGGRKNYDTGSSCTSEMYFPDWIYKDLEQGNILEGCLSNSEEENDMVKKITMVSLWCIQTNPSDRPSMSRVIEMLQGPLQSISCPPKPFLYSPEMSSLQTSYVSSNNLLETNSERHSENVTVM*	878

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1368	877	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	678	690	IPR008271	GO:0004672\|GO:0006468
	Tpr6g1368	877	ProSiteProfiles	Protein kinase domain profile.	556	844	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g1368	877	SUPERFAMILY	Protein kinase-like (PK-like)	534	829	IPR011009	-
	Tpr6g1368	877	Gene3D	Ribonuclease Inhibitor	324	457	IPR032675	-
	Tpr6g1368	877	Gene3D	Ribonuclease Inhibitor	24	319	IPR032675	-
	Tpr6g1368	877	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	15	867	IPR045874	GO:0004672
	Tpr6g1368	877	SMART	serkin_6	556	833	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g1368	877	ProSitePatterns	Protein kinases ATP-binding region signature.	562	584	IPR017441	GO:0005524
	Tpr6g1368	877	Pfam	Protein kinase domain	560	827	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr6g1368	877	Gene3D	Transferase(Phosphotransferase) domain 1	630	837	-	-
	Tpr6g1368	877	PANTHER	TYROSINE KINASE FAMILY PROTEIN	15	867	-	-
	Tpr6g1368	877	Gene3D	Phosphorylase Kinase; domain 1	529	629	-	-
	Tpr6g1368	877	SUPERFAMILY	L domain-like	34	445	-	-
	Tpr6g1368	877	SMART	LRR_typ_2	85	107	IPR003591	-
	Tpr6g1368	877	SMART	LRR_typ_2	185	208	IPR003591	-
	Tpr6g1368	877	SMART	LRR_typ_2	419	441	IPR003591	-
	Tpr6g1368	877	SMART	LRR_typ_2	108	131	IPR003591	-
	Tpr6g1368	877	Pfam	Leucine rich repeat N-terminal domain	34	58	IPR013210	-
	Tpr6g1368	877	Pfam	Leucine rich repeat	111	148	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1368	Tpr-Chr6	14646919	14649984	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1368	483	868	Receptor kinase-like Gene Family	AT4G18250	50.995	1.15e-127	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Tpr6g1368		Pkinase	6.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1368	-		-	cam:101489592	1023.85