Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1365 ATGGACGACGACGACGATTCACAACAACCATTCTCTCAATCCCAAACCGAAATCTACTTAGCAGGTTTCATAATGGCCAACATCGTCGGCCTAAGATACTACAACGGCACAATCAACGGTCGTGAAATCCTCGGCCTAGTTCGCGACCCACTCAACCAATACGACACAAACGCCATCAAAGTTCTCAACACTCAATCTCTCCAAGTCGGTTTTATCGAACGCTCCGTCGCCGCGGTTCTCTCGCCGCTAATGGATGCTCATATCATTCAGATTGAAGGCATTGTTGGCACAAACAATCGCTCTAAGTTCCGTATCCCTTGTCAGATTCATATTTTCTCTCACTTATCTTCTTTTGATGTTGTTCATGATGCTTTTATTGGTTCCACTGTTCATTTCATTTCGCATTCTGATCCTTCTTTTACTCTTTCTCATTCTGTTGCTGTTCAAGAAACTCGAGCTGATTTAGCCGCCGGAACAAGCGCCGCTGCCGGTAACAATAAAACTAAAATCAAAACCCTAGATCAAATATTCAAACTCGTTCGCGAAAATCTAGCTGCTAAAAACAACATTTCTGAACCGTTAATTCCTCCTTCTAAGTTAATTAAATCAGAATTGCTTCAGCATCAGAAGGAAGCATTAGGATGGCTTGTTCATCGTGAAAATTCCGATGATTTACCGCCGTTTTGGGAAGAGAAAGAGGGGGGTTTTGTTAATGTGTTAACTAATTATCAAACTAGTACACGACCGGAGTCTCTTCGCGGAGGGATATTCGCGGATGGGATGGGATTAGGGAAGACTTTGACAATGCTTTCGTTGATTGCTTTTGATAAAATGAAATGTGGGAAGAAGAGAAGTAGGAGTAGGGTGGAGATGAATAGTACATTGATTGTGTGTCCTCCTTCTGTGATTTCGACGTGGATAACTCAATTGGAAGAGCATACTAATGGTGGTGCATTGAAGACTTATTTGTATTATGGTGATAGAAGGACTCAAGATGCTGAGGAATTGAGGAAATATGATATTGTGTTGACTACTTATGCTACTTTGGGAGCTGAATTGCGGTGTCCGGATGCTGCGGTGAAGAAGTTGGGGTGGAGGAGGATTGTTTTGGATGAAGCGCATACGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGGTTTGAATGGTAAGAGGAGATGGGCTGTTACTGGTACACCTATTCAGAATGGTTCTTATGATTTGTTTTCTCTTATGGCTTTTTTGCATTTTGAGCCTTTTTCTATAAAGAGTTATTGGCAAAACTTGGTTCAACGCCCGCTTACTCAAGGCAAACAGACAGGGCTTAGTCGATTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGACACTGCGTTGGTGGGGCTTCCACCGAAGATCGTTGAGACTTGTTATGTTGAACTTTCATGTGAAGAGCGTAAACTGTATGACGATGTTAAAGAGGAAATAAAGTCGCTTATGATGCATTATAACAGCAATGACAGACTAGTGTATAGTTACTCCACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTACTCATTTGTCGATGTGCCCTTTGGATTTCAAGGCGTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAGTTAGGATGCTACAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCTCCAACGGATATTGTAATTACATGCTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGTAATTCCAGTTGTCCACTTTGTCGGCGCTCCCTCTCAGAATCCGACTTATTCTCAGCCCCCCCTGAATCTTTCAAGACCGATACTACTGAACTGTGCACACCAGAAGTAGGGTCATCGACCAAAGTCTCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACCAAATCAGTTGTATTTTCACAATTCCGTAAAATGCTGCTGCTGTTAGAAGAACCTTTAAAAGCAGCTGGCTTTAAAACATTGCGTCTTGATGGGACACAGAATGCAAGACAAAGAGCTCAAGTTATTGACCAATTTCAACTCTCAAAAGTTGATGAGCCAATGATTCTGCTTGCAAGTCTCAAGTCTTCAAGTACAGGTATAAATCTTACGTCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCAGCAGTTGAAGAACAAGCAATGGATCGTGTTCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAAACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTACAGTTGCAAGAGATGAAGAAAGATATAACAAGCCGAGGATCTGGGAAGAGATCAAATGATATTGCTGGTATGGGCATAAATGATCTCCGTTTTGTTTTAGGAGAGTAG 2445 0.411 MDDDDDSQQPFSQSQTEIYLAGFIMANIVGLRYYNGTINGREILGLVRDPLNQYDTNAIKVLNTQSLQVGFIERSVAAVLSPLMDAHIIQIEGIVGTNNRSKFRIPCQIHIFSHLSSFDVVHDAFIGSTVHFISHSDPSFTLSHSVAVQETRADLAAGTSAAAGNNKTKIKTLDQIFKLVRENLAAKNNISEPLIPPSKLIKSELLQHQKEALGWLVHRENSDDLPPFWEEKEGGFVNVLTNYQTSTRPESLRGGIFADGMGLGKTLTMLSLIAFDKMKCGKKRSRSRVEMNSTLIVCPPSVISTWITQLEEHTNGGALKTYLYYGDRRTQDAEELRKYDIVLTTYATLGAELRCPDAAVKKLGWRRIVLDEAHTIKNVNAGQSQAVIGLNGKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQNLVQRPLTQGKQTGLSRLQVLMAAISLRRTKDTALVGLPPKIVETCYVELSCEERKLYDDVKEEIKSLMMHYNSNDRLVYSYSTILSMILRLRQICTHLSMCPLDFKACLFSSTDIEDVSKNPELLQTLVRMLQDGEDFDCPICLSPPTDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSESDLFSAPPESFKTDTTELCTPEVGSSTKVSTLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTQNARQRAQVIDQFQLSKVDEPMILLASLKSSSTGINLTSASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVKLIAKNSIEEKILQLQEMKKDITSRGSGKRSNDIAGMGINDLRFVLGE* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1365 814 SMART ultradead3 201 427 IPR014001 -
Tpr6g1365 814 SMART ring_2 570 608 IPR001841 -
Tpr6g1365 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 620 IPR013083 -
Tpr6g1365 814 Gene3D - 12 129 - -
Tpr6g1365 814 Gene3D - 468 803 IPR027417 -
Tpr6g1365 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 420 IPR014001 -
Tpr6g1365 814 CDD RING-HC_HLTF 569 609 - -
Tpr6g1365 814 CDD SF2_C_SNF 640 769 - -
Tpr6g1365 814 Gene3D - 238 459 IPR038718 -
Tpr6g1365 814 ProSitePatterns Zinc finger RING-type signature. 585 594 IPR017907 -
Tpr6g1365 814 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 11 276 - -
Tpr6g1365 814 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 284 810 - -
Tpr6g1365 814 ProSiteProfiles Zinc finger RING-type profile. 570 609 IPR001841 -
Tpr6g1365 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 813 IPR027417 -
Tpr6g1365 814 Pfam SNF2-related domain 208 530 IPR000330 GO:0005524|GO:0140658
Tpr6g1365 814 Pfam Zinc finger, C3HC4 type (RING finger) 567 613 - -
Tpr6g1365 814 Coils Coil 771 791 - -
Tpr6g1365 814 SMART helicmild6 673 758 IPR001650 -
Tpr6g1365 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 809 IPR001650 -
Tpr6g1365 814 SMART HIRAN_2 21 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr6g1365 814 Pfam HIRAN domain 25 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tpr6g1365 814 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 284 810 - -
Tpr6g1365 814 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 276 - -
Tpr6g1365 814 Pfam Helicase conserved C-terminal domain 642 758 IPR001650 -
Tpr6g1365 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 453 IPR027417 -
Tpr6g1365 814 SUPERFAMILY RING/U-box 566 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1365 Tpr-Chr6 14615143 14620836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1365 1 796 RAD5 or RAD16-like Gene Family AT5G05130 56.824 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g1365 SNF2_N 4.5e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1365 K15711 - vvi:100263696 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1365 6 14615143 14620836 Tpr6g1365 6 14615143 14620836 ECH