Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1364 ATGTCGAGCGGAAGAAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATAACCAATGAGAGCAGTATGCTAGTGACTTTCTCGAAGCGTCGTACTGGGCTCTTCAAGAAAGCTAGTGAGCTTAGCACTCTTTGTGGGGCAAATGTTGCTCTAATTATATTCTCACCTAGTGGAAAAGCATTTTCCTTTGGTCACCCAAATGTTGATACGGTCATAGATCGTTATCTCTCATTAGTCCCATCTCAAAACAATGGCGACATGCGGTTCATTGAGGCTGATGTGCGTGAGCTAAATTCTCAGCTGAGTCGGTTCAACAATGCGTTGGACATTGAGAGAAGGCGTAGTGTTGAGTTAAGTCATATGCACAATATGAATGAAACTCAGTGTTGGCTGGATCGTCCTGTTGATGGGATGAATTTTGATCAACTTGAATCATTGAAAAATGCATTAGAGAATCTAAAGAAACATATTGATGAACATCCTGCGAGGCTTGTAATTCAGGGTGCTCCTACCCAAACCGTGCCATTTTTTGTTGGAGATGGTTTATCCTCTAACATGGATGTCCATCATCAACCAAATCATCAACAAGGTCAAAGGTTTCCCACACAACCTTTTCAAGACCATATGTTGCAACCTTATTTGTTTGATTACAACAATATGGAAGGAGGAGGATATGGACCCTTCGAAACTGGTTCATCCTCTAACATGCATGTCAATCATCAATCAAATCATCAACAAGGTCCAATCTTTCCGGCACAACATTTTCAGGACTCTATATCGCAACCTTATTTGTTTGATTGCAACAATATGGGAGGAGGAGGATATCGACCCTTCGAAAATGGTTCATCTTCAAACATGCATGTCCATCATCAACCAAATCATCAAGGTCAAGTGTTTGCGGCACAACCTTTTCAGGATCCTATGTTGCAACCTTATTTGTTTGATACAACAATATGGGAGGACGAGGACATGGAACCTTCTGATTCTTATGATTTTTTAAGGCCTAGATCCACCTTAGATGCCCTTGGCTATTAA 1038 0.4114 MSSGRKSRGRQKIEMKKITNESSMLVTFSKRRTGLFKKASELSTLCGANVALIIFSPSGKAFSFGHPNVDTVIDRYLSLVPSQNNGDMRFIEADVRELNSQLSRFNNALDIERRRSVELSHMHNMNETQCWLDRPVDGMNFDQLESLKNALENLKKHIDEHPARLVIQGAPTQTVPFFVGDGLSSNMDVHHQPNHQQGQRFPTQPFQDHMLQPYLFDYNNMEGGGYGPFETGSSSNMHVNHQSNHQQGPIFPAQHFQDSISQPYLFDCNNMGGGGYRPFENGSSSNMHVHHQPNHQGQVFAAQPFQDPMLQPYLFDTTIWEDEDMEPSDSYDFLRPRSTLDALGY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1364 345 PANTHER MADS BOX PROTEIN 8 163 - -
Tpr6g1364 345 Gene3D - 89 166 - -
Tpr6g1364 345 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr6g1364 345 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr6g1364 345 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr6g1364 345 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr6g1364 345 Coils Coil 88 115 - -
Tpr6g1364 345 Coils Coil 144 164 - -
Tpr6g1364 345 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 163 - -
Tpr6g1364 345 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr6g1364 345 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Tpr6g1364 345 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tpr6g1364 345 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr6g1364 345 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1364 Tpr-Chr6 14603244 14604281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1364 5 180 Type I MADS-box Gene Family AT5G60440 46.196 3.25e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr6g1364 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1364 - - mtr:MTR_1g105905 251.906