Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1363 ATGAAGTCTGAAGAACTTGATCACTGGAGAAAGTACTTTCGTTCATCAAATTCTGACATCTTTAGTATCATTGACAATGCTATTGTTGTTGCTGCTATGGATTGTCCTAAGGAGTTTAAGTCTAGGAGAGACAAAATTGCTGAGAAGCTCTTCTCAGTTTTGCTGAATCGTTGTAAGGACTGTGAGAAGGTTGAAGTGCCTGTTACTGAGAATCAAAATGGCGAAGTTTGTAAGAGAGGTTCTGTTAAAAATGGTGCTAGTAAGGAGAGTAATGTGAATGGTGCTGGTAGGGAAGACAATGAAGTGATGAAGGTGAAACCTGCTAGCAATTACAGCTTTGATGAAGCTGAAGCTCTTACTGATGAACTTGAGGCAGAATCTCAAGCTATTGCTGAGGTTTTGAGGATCAAAGAGATTCTCAGAAACAAGGACGATGAGTCTGAATCAGTGCTGTTTGAATCACTAAGGAGGCTTGAACTGATGGGAATGTCTATGAATATTCTGGAGTCAACTGCGATCGGAAAGGCTGTCAATCCTCTCCGGAAACATGGGTCCAAGCAAGTCCGTGATCTCGCAAAGATTCTTATTGTTGCTTGGAAGGAAATGGTGGATACATTTTATACCAAACGTGACCCAGATGCAACCACTCCGGAATCATTAAATCCATCCGGCGTTGTGAATGCAGAAGAGGAAGAAGAAGGAGGACTTCCTTCAATTCCTTTGGACGAAGGGGCTTTCTTTGTGGCTCCACCCGGAATGGAACTCACTGATAAGTTCTTCGATGGCATGGATGATGATGGAAATATTCAAAAGAGTGCGCCACTTAACAAGAACCAGGGCAATGCCAGAAGGCCATCTATGGACACCGAAATTAAGGACAAGAGGAATTTGCCGGCATTTAATGAAACAGCCATCGTTCCCAAGGAGAATAAGATTCAGCAATTGAAGAAGAACGATGCTGCAGTGAGGCTAAATAAACCGAAACCAGTAGATGCTGATTCTGGCCCTTCTGGCCCTCGCACATACCTAACGTCAAACATTCAGCGAAATGGCAATGTGGAGCCAAAGGTGCAGCAGAAACTGGAAAGCAGTGCTGTCCCAAAGAGGCCTCTCAATGCTCAACAAGATAATTCCAAATGTTTTGATGATGCTGCTAAGCTCGAAGCCACTAAGCGGAGACTTCAAGAGAGTTATCAACAAGCTGAAAATGCTAAGAGGCAAAGGACAATTCAAGTGATGGATATCAATGAAATTCCAAAGCAAGGGGCTGGCCACCGGAACACACATTGCAAACCGGGAAATCAAAATAGGCTACGAGGTCTTTTGCGAAGATAG 1335 0.4352 MKSEELDHWRKYFRSSNSDIFSIIDNAIVVAAMDCPKEFKSRRDKIAEKLFSVLLNRCKDCEKVEVPVTENQNGEVCKRGSVKNGASKESNVNGAGREDNEVMKVKPASNYSFDEAEALTDELEAESQAIAEVLRIKEILRNKDDESESVLFESLRRLELMGMSMNILESTAIGKAVNPLRKHGSKQVRDLAKILIVAWKEMVDTFYTKRDPDATTPESLNPSGVVNAEEEEEGGLPSIPLDEGAFFVAPPGMELTDKFFDGMDDDGNIQKSAPLNKNQGNARRPSMDTEIKDKRNLPAFNETAIVPKENKIQQLKKNDAAVRLNKPKPVDADSGPSGPRTYLTSNIQRNGNVEPKVQQKLESSAVPKRPLNAQQDNSKCFDDAAKLEATKRRLQESYQQAENAKRQRTIQVMDINEIPKQGAGHRNTHCKPGNQNRLRGLLRR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1363 444 CDD TFIIS_I 130 204 - -
Tpr6g1363 444 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 131 215 IPR035441 -
Tpr6g1363 444 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 437 IPR044805 -
Tpr6g1363 444 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 1 437 - -
Tpr6g1363 444 MobiDBLite consensus disorder prediction 266 287 - -
Tpr6g1363 444 MobiDBLite consensus disorder prediction 210 241 - -
Tpr6g1363 444 SMART TFS2_5 130 205 IPR003617 GO:0005634
Tpr6g1363 444 ProSiteProfiles TFIIS N-terminal domain profile. 131 206 IPR017923 -
Tpr6g1363 444 MobiDBLite consensus disorder prediction 271 285 - -
Tpr6g1363 444 Pfam TFIIS helical bundle-like domain 155 203 IPR017923 -
Tpr6g1363 444 Coils Coil 116 136 - -
Tpr6g1363 444 Coils Coil 384 411 - -
Tpr6g1363 444 MobiDBLite consensus disorder prediction 420 444 - -
Tpr6g1363 444 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 216 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1363 Tpr-Chr6 14576880 14580756 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Tpr6g1363 Med26 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1363 - - gmx:100799367 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1363 6 14576880 14580756 Tpr6g1363 6 14576880 14580756 ECH