Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1360 ATGGCTTCAAGAATTGTTCCTCAACAACAACCTAGAGGTGCTGATTTAGTTGGCCTCCGCAATTGCGCAAATACTATTTGTCTACGACATTCTATCGAACTTAAATTTAAAAAGACTTGCATTGGTAGTTTGGATGACATAACAGAGGAACCCGCTCCGACTAATAGTGCAACAAACTCAAGCGACCATTCAGAAAAGAGACAAGTGACTTTTGAGGATTTTCAAAAGGCTAGGCTCGAAATAAGACCTAGTGCCATGAAAGAGGTGACCCTTGAGGTTCTAAAGGTTAAATGGGAAGATATTGGCGGCCAAAGGGAAGTCAAAAACCAATTATTGGAAACACTAGTATGGCCCCAAAAGCACCGAGATGCATTCACCCGTATTGGGACTGATGCTCCATCAGGTGTATTGATGTATGGGCCTCCAGGTTGTAGCAAAACCCTAATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTGTTTGTTAAAGCAAGGGACAATGCCCCATCAGTAATATTTTTCGATGAAATAGATAGTCTTGCTATGAATCGTGGGAGAGATGGTGATGGTGTTTCCGTGTCTGATAGGGTCATGGCTCAACTCCTTGTTCAAATGGATGGTGTGCGTAGCAGAGGTGATGTTGCTGTTATAGCTGCTACAAATAGGCCAGACAATATTGATCCTGCTCTTTTAAGACCAGGACGATTTGACCGTCAGCTATATGTTGGACCTCCAAATGAGAAGGACCGAGAAGAGATCTTTAGCATTCATTTGCGCAAAACTCCATATGATTCTGATGTTAGCATGAAAGAACTGGCTCAACTGACAGATGGTTATACTGGGGCTGATATATCACTTGTATGTCGACAAGCAGCTCTTGCAGCATTGGAGGAAAGCTTTGATGCTTCTGTTGTAACAATGAAGCACTTTAAGATGGCAATCGAACAAGTTCAGCTCTCTGAAATTCAGTTCTATCAAAAATTCTCAGCAACATTTCATAGGGGCGTGCGCTCTGATTCGGTCGACGTAAATGGTTAA 1110 0.4315 MASRIVPQQQPRGADLVGLRNCANTICLRHSIELKFKKTCIGSLDDITEEPAPTNSATNSSDHSEKRQVTFEDFQKARLEIRPSAMKEVTLEVLKVKWEDIGGQREVKNQLLETLVWPQKHRDAFTRIGTDAPSGVLMYGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFVKARDNAPSVIFFDEIDSLAMNRGRDGDGVSVSDRVMAQLLVQMDGVRSRGDVAVIAATNRPDNIDPALLRPGRFDRQLYVGPPNEKDREEIFSIHLRKTPYDSDVSMKELAQLTDGYTGADISLVCRQAALAALEESFDASVVTMKHFKMAIEQVQLSEIQFYQKFSATFHRGVRSDSVDVNG* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1360 369 ProSitePatterns AAA-protein family signature. 238 256 IPR003960 GO:0005524|GO:0016887
Tpr6g1360 369 Gene3D - 95 342 IPR027417 -
Tpr6g1360 369 Gene3D - 269 339 - -
Tpr6g1360 369 CDD AAA 102 268 - -
Tpr6g1360 369 PANTHER AAA-FAMILY ATPASE 13 356 - -
Tpr6g1360 369 SMART AAA_5 132 270 IPR003593 -
Tpr6g1360 369 Pfam AAA+ lid domain 290 335 IPR041569 -
Tpr6g1360 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 346 IPR027417 -
Tpr6g1360 369 Pfam ATPase family associated with various cellular activities (AAA) 136 267 IPR003959 GO:0005524|GO:0016887
Tpr6g1360 369 PANTHER ATPASE FAMILY PROTEIN 2 HOMOLOG 13 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1360 Tpr-Chr6 14489360 14492912 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1360 69 363 Calmodulin-binding Proteins AT3G56690 71.186 1.89e-149 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1360 - - cam:101494446 511.146