Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1353 ATGGCTTCAAGAATTGTTTCTCAACAACAACCCAAAGGTGATGCTGTAGTGGGGGGAGGGAAACCAGTGAAGAAGAACGGTGCAGCAGGTGAAGGAAGGAACCGAAGAGCACTTCTTGATATTGGAAATGTGGTCACTCTAAAAGGTGTTGAAGTCAAGCCAAATCGCCCTGTCACAAGGAGTTTTTGTGCACAATTACTTGCCAATGCTCAAGCAGCAAAAGCTAATGAGAATAACAAGAAACAGACTTGTGCCAATGTTCCTACTGCTGCTGTTGATGGAGTTGCAGCAGTGGCTAAAAGAGTGGCCCCTAAACCTGCTGTTCAGAAGAAAGTCACTACAAAACCAAAGCCTGTTCTGAAGGAAGTCATTGAAATCTCAGATGAAAAGGACAGTGAAGACAAGGCTGTGCACAAGAAAAAGGAAGCAGATCTTAATTCTAAGAAGAAACCATCACGTACTCTTACTTCTGTTCTCACAGCCAGAAGCAAGGCTGCATGTGGTTTGACTAACAAACCAAAGGAAATTGTTGACATTGATGCTGGTGATGCTAACAATGAACTTGCTGCTATTGAATATCTTGAAGATATTTACAAGTTCTATAAGATAGTTGAGAATGAGAACCGTCCACATGATTACATGGACTCACAGCCTGAGATAAATGAGAAGATGAGGGCAATACTCATTGATTGGCTAGTAGATGTTCACACCAAATTTCAACTTTCACCAGAAGCCCTTTATCTCACAATCAACATAGTTGATAGATTCCTAGCTGTCAAACTTGTGCCAAGAAGGGAACTTCAATTGGTTGGCATCAGTGCTATGCTGATGGCATCAAAGTATGAAGAAATCTGGCCACCTGAGGTTAATGACTTTGTGACCCTCTCAGATTATGCTTACACTCACGAACAAATTCTTATCATGGAGAAAACCATCCTAGGCAAACTTGAATGGACATTAACTGTGCCTACACCTTTTGTGTTCCTTGTCCGTTTCATCAAAGCGGCATCCATGTCATCGGTGTCATCTGTGTCCGGTGTTCCTTCTGATCAAGAACAAGAACAGCCTTTGGAGAACATGGCTCATTTTCTATCTGAATTGGGGATGATGCACTATGCTACCTTAAAGTATTGTCCATCAATGGTTGCTGCTGCAGCAGTTTTTGCAGCAAGGTGCACTTTGAACAAGAGTCCTGTTTGGAATGAGACACTGAAGATGCACACTGGTTACTCAGAAGAACAGTTAATGGATTGTGCTAAGTTGTTGACTAGTTTTCACTCTAGTATTGGGAATGGAAAGCTGAAGGTTGTCTATAGGAAGTACTCTGATCCTCAGAGAGGTGCTGTTGCTGTGCTTCCACCAGCAAAGAATCTGTTGCCTGCTGTTGGTTCTGTCTAG 1398 0.4249 MASRIVSQQQPKGDAVVGGGKPVKKNGAAGEGRNRRALLDIGNVVTLKGVEVKPNRPVTRSFCAQLLANAQAAKANENNKKQTCANVPTAAVDGVAAVAKRVAPKPAVQKKVTTKPKPVLKEVIEISDEKDSEDKAVHKKKEADLNSKKKPSRTLTSVLTARSKAACGLTNKPKEIVDIDAGDANNELAAIEYLEDIYKFYKIVENENRPHDYMDSQPEINEKMRAILIDWLVDVHTKFQLSPEALYLTINIVDRFLAVKLVPRRELQLVGISAMLMASKYEEIWPPEVNDFVTLSDYAYTHEQILIMEKTILGKLEWTLTVPTPFVFLVRFIKAASMSSVSSVSGVPSDQEQEQPLENMAHFLSELGMMHYATLKYCPSMVAAAAVFAARCTLNKSPVWNETLKMHTGYSEEQLMDCAKLLTSFHSSIGNGKLKVVYRKYSDPQRGAVAVLPPAKNLLPAVGSV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1353 465 SMART Cyclin_C_2 323 455 IPR004367 -
Tpr6g1353 465 SUPERFAMILY Cyclin-like 324 457 IPR036915 -
Tpr6g1353 465 Pfam Cyclin, N-terminal domain 196 320 IPR006671 -
Tpr6g1353 465 Pfam Cyclin, C-terminal domain 323 454 IPR004367 -
Tpr6g1353 465 CDD CYCLIN 224 313 IPR013763 -
Tpr6g1353 465 PIRSF Cyclin_A_B_D_E 1 465 IPR039361 -
Tpr6g1353 465 Gene3D - 196 450 - -
Tpr6g1353 465 SMART cyclin_7 230 314 IPR013763 -
Tpr6g1353 465 SMART cyclin_7 327 424 IPR013763 -
Tpr6g1353 465 PANTHER CYCLINS 22 460 IPR039361 -
Tpr6g1353 465 Gene3D - 210 321 - -
Tpr6g1353 465 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 22 460 - -
Tpr6g1353 465 MobiDBLite consensus disorder prediction 130 151 - -
Tpr6g1353 465 MobiDBLite consensus disorder prediction 130 149 - -
Tpr6g1353 465 CDD CYCLIN 321 422 IPR013763 -
Tpr6g1353 465 MobiDBLite consensus disorder prediction 1 34 - -
Tpr6g1353 465 ProSitePatterns Cyclins signature. 225 256 IPR006671 -
Tpr6g1353 465 SUPERFAMILY Cyclin-like 185 320 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1353 Tpr-Chr6 14332486 14335127 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1353 1 464 Core Cell Cycle Gene Families AT4G37490 51.143 1.48e-143 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1353 K21777 - mtr:MTR_7g089080 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1353 6 14332486 14335127 Tpr6g1353 6 14332486 14335127 ECH