Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1352 ATGCCTTCTTCCAATTCAAAGCACAGTAACAGCAATAGCAGCAGCAACAAGAAGCAATCAAAATCAAACTCAAAATCAAGGTCACAATCGTCATTTCCCGATGCCGCCACTCCACCCCGAACCACCACCGCCGCCGAACCACAACAACTCACTTCTCTCATCCAACAAGCTTCTCAAATCTTCCCATCCTTCATTTCACAATCCGCTTTCATCGCCGAAATCACCGACATCGATACCACCAATTCAGCTTCCAAAGGCGCTAAAATTTGGCTTTCTGAGCCTTTTATGGTTGCATCTTCTCTTGCTCCCGGTTCACTTGTTTCTGTGTCTATTCCATCTTCAAGTAAAGGGGTTGCGCAATTGCATGGATTTCCTCTCATGTCATTGACTAATGAATGTGTTAAATGCTATGGGTTGAAAACTTGTGCCACATTGGATGATAATGCTGCTGGAAATTACTTTGTTCTTGCAACGGTTTTTCCTTCTACAAAGGTATTGAAGAATGGAGTACGCCTGTCTTTAAATCTTTCCTTTGCGATGGGATGTCCTATTTCGGGCACATGTGTGTTTGTTCACCCATTACAGAAACAATCCTTGGTATATAATTGCAAAGAGTTATATCTTCAATTGGCTCCTTGTAAGATTGGGGCACCATTGAAAGTTAATCTCCCCTCATCGGACTTGTCTAAGTCAAGATCCCGTGCCCAATCTGAGAATGATATTGTTGCATCTCCTACAACACCTTCTTATGGATCAAAGTTTTCGAATGACAGTGTGTATTCTTCCCCCATATTTGAAGATTCAACATCAAGTGTAACCAATTCCAATGGTCAATCGGTGGCTTCATTTGATGTTAGCAAGGCATTAGGAAATGAAAGTTCCAAAAAGTTATTAGAAACATGTGCAACTTCATGGTTATACTCTCGTTGTATGTTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCTGAGTTTTGCATTTTCCAAGTGACGGGAATTAAAAAGGGGTCAACTAACATACCTGACTATTGTCTATTGAATGGGAACAGTGATTTAAATCTTGAGGATTCTGATATGCTAGAGAATGTGAATCTGGCTTTCACTGTCAATTGGGAAACAAAGGTATTTTTATCTTTGCCTTCATATGCAACATTTGAAGAGTCAATTCGAATGGATTTATCATGTCTGAAACTTGATGACAAGGATGTTAAACCCAGCAGTGATAATATTTCTAAATTAGGTGGTCTATCTAAAGAAGAAATGTTTTTAAAGGAAATAATTTATTCTTCAAAGAACGATTTTTTACCAAGTTTTGATACGCAGAATACCAGAGGTGTCTTTCTTCATGGTCCACCTGGTACGGGAAAGACTTCGCTGGTTCAATTATGTGCTCATGATGCTGGGGTCAATTTTTTCTCAATAAATGGACCTGAAATTGTTACCCAGTACTATGGGGAAAGTGAGAAAGCATTGAAGGATGTTTTTGATTCAGCCACTCAAGCTTCACCTGCCGTGATATTTATTGATGAAATAGATGCAATTGCCCCTCCAAGGAAAGATGGGGTTGAAGAGCTATCTAAAAGATTGGTTGGAACCTTATTGAAGCTGATGGATGGAATTAGTATAAATGGAGGATTAGTTGTAATTGCTGCTACTAATAGGCCTGACCATGTTGATCCAGCTCTCAGACGACGTGGAAAATTTGACCAGGATATTGAAATTGGTGTGCCATCAAAAGCCCAACGAGAAGATATTTTGCGCACTATTCTCTGTGAAATAGATCACTCTCTTTCTGAGACGCAAATTGAAGAGCTTGCTTCAACAACTCATGGATTTGTAGGTGCTGATTTAGTTGGCCTCCGCAATTGCGCAAATACTATTTGTCTACGACATTCTATCGAACTTAAACTTAAAAAGACTTGCATTGGTAGTTTGGATGACATAACAGAGGAACCCGCTCCGACAAATAGTGCAACAAACTCAAGCGACCATTCAGAAAAGAGACAAGTGACTTTTGAGGATTTTCAAAAGGCTAGGCTCGAAATAAGACCTAGTGCCATGAAAGAGGTGACCCTTGAGGTTCCAAAGGTTAAATGGGAAGATATTGGCGGCCAAAGGGAAGTCAAAAACCAATTATTGGAAACACTAGTATGGCCCCAAAAGCACCGGGATGCATTCACCCGTATTGGAACTGATGCTCCATCAGGTGTATTGATGTATGGGCCTCCAGGTTGTAGCAAAACCCTAATGGCACGTGCAGTTGCTTCTGAAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTGTTTGTTAAAGCAAGGGACAATGCCCCATCAGTAATATTTTTCGATGAAATAGATAGTCTTGCTATGAATCGTGGGAGAGATGGTGATGGTGTTTCCGTGTCTGATAGGGTCATGGCTCAACTCCTTGTTCAAATGGATGGTGTGCGTAGCAGAGGTGATGTTGCTGTTATAGCTGCTACAAATAGGCCAGACAATATTGATCCTGCTCTTTTAAGACCAGGACGATTTGACCGTCAGCTATATGTTGGACCTCCAAATGAGAAGGACCGAGAAGAGATCTTTAGCATTCATTTGCGCAAAACTCCATATGATTCTGATGTTAGCATGAAAGAACTGGCTCAACTGACAGATGGTTATACTGGGGCTGATATATCACTTGTATGTCGACAAGCAGCTCTTGCAGCATTGGAGGAAAGCTTTGATGCTTCTGTTGTAACAATGAAGCACTTTAAGATGGCAATCGAACAAGTTCAGCCCTCTGAAATTCAGTTCTATCAAAAATTCTCAGCAACATTTCATAGGGGCGTGCGCTCTGATGCGGTCGACGTAAATGGTTAA 2913 0.4113 MPSSNSKHSNSNSSSNKKQSKSNSKSRSQSSFPDAATPPRTTTAAEPQQLTSLIQQASQIFPSFISQSAFIAEITDIDTTNSASKGAKIWLSEPFMVASSLAPGSLVSVSIPSSSKGVAQLHGFPLMSLTNECVKCYGLKTCATLDDNAAGNYFVLATVFPSTKVLKNGVRLSLNLSFAMGCPISGTCVFVHPLQKQSLVYNCKELYLQLAPCKIGAPLKVNLPSSDLSKSRSRAQSENDIVASPTTPSYGSKFSNDSVYSSPIFEDSTSSVTNSNGQSVASFDVSKALGNESSKKLLETCATSWLYSRCMLLGNLVNVPMFSEFCIFQVTGIKKGSTNIPDYCLLNGNSDLNLEDSDMLENVNLAFTVNWETKVFLSLPSYATFEESIRMDLSCLKLDDKDVKPSSDNISKLGGLSKEEMFLKEIIYSSKNDFLPSFDTQNTRGVFLHGPPGTGKTSLVQLCAHDAGVNFFSINGPEIVTQYYGESEKALKDVFDSATQASPAVIFIDEIDAIAPPRKDGVEELSKRLVGTLLKLMDGISINGGLVVIAATNRPDHVDPALRRRGKFDQDIEIGVPSKAQREDILRTILCEIDHSLSETQIEELASTTHGFVGADLVGLRNCANTICLRHSIELKLKKTCIGSLDDITEEPAPTNSATNSSDHSEKRQVTFEDFQKARLEIRPSAMKEVTLEVPKVKWEDIGGQREVKNQLLETLVWPQKHRDAFTRIGTDAPSGVLMYGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFVKARDNAPSVIFFDEIDSLAMNRGRDGDGVSVSDRVMAQLLVQMDGVRSRGDVAVIAATNRPDNIDPALLRPGRFDRQLYVGPPNEKDREEIFSIHLRKTPYDSDVSMKELAQLTDGYTGADISLVCRQAALAALEESFDASVVTMKHFKMAIEQVQPSEIQFYQKFSATFHRGVRSDAVDVNG* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1352 970 Gene3D - 400 577 IPR027417 -
Tpr6g1352 970 PANTHER AAA-FAMILY ATPASE 87 648 - -
Tpr6g1352 970 PANTHER AAA-FAMILY ATPASE 670 963 - -
Tpr6g1352 970 MobiDBLite consensus disorder prediction 1 47 - -
Tpr6g1352 970 CDD AAA 444 575 - -
Tpr6g1352 970 Gene3D - 578 696 - -
Tpr6g1352 970 Pfam AAA+ lid domain 891 936 IPR041569 -
Tpr6g1352 970 SMART AAA_5 442 578 IPR003593 -
Tpr6g1352 970 SMART AAA_5 733 871 IPR003593 -
Tpr6g1352 970 Gene3D - 870 940 - -
Tpr6g1352 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 947 IPR027417 -
Tpr6g1352 970 PANTHER - 87 648 - -
Tpr6g1352 970 PANTHER - 670 963 - -
Tpr6g1352 970 CDD AAA 703 869 - -
Tpr6g1352 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 688 IPR027417 -
Tpr6g1352 970 Gene3D - 697 945 IPR027417 -
Tpr6g1352 970 Pfam ATPase family associated with various cellular activities (AAA) 737 868 IPR003959 GO:0005524|GO:0016887
Tpr6g1352 970 Pfam ATPase family associated with various cellular activities (AAA) 446 575 IPR003959 GO:0005524|GO:0016887
Tpr6g1352 970 ProSitePatterns AAA-protein family signature. 839 857 IPR003960 GO:0005524|GO:0016887
Tpr6g1352 970 ProSitePatterns AAA-protein family signature. 546 565 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1352 Tpr-Chr6 14318582 14327931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1352 15 964 Calmodulin-binding Proteins AT3G56690 50.000 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1352 - - cam:101494446 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1352 6 14318582 14327931 Tpr6g1352 6 14318582 14327931 ECH