Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1350 ATGAGAGAAGACGATTCAAATTGGTTTTCAAGATGGGAAGAACAACTCCCTTCACCTGAAGAACTCATGCCTTTATCACAAACCCTAATCACCCCTGATCTTGCTATAGCTTTTGACATCAGAAACAACATCAACAACAATAATAATAACCCACTTAACAACATTAATCACTCAAACCCACAACAACAACAACAACATCATCAAAATCATCAAAATCAACAACAACAACCTCAACCTTCTTCACTTCCTTCTTCAACCGATTTCGCCGATTCTGGTGAACTTGGTTCTGGTACAGCCGGAGAAGAACCAGCTAGAACACTCAAAAGACCTCGTCTTGTATGGACCCCACAACTCCACAAACGTTTTGTTGATGCAGTGGCACATCTTGGAATCAAAAACGCTGTTCCAAAGACGATAATGCAGCTTATGAGTGTTGATGGTTTAACAAGAGAAAACGTGGCGAGTCACTTGCAAAAGTATAGGCTTTATTTGAAACGCATGCAGGGAATTTCTTCTGGTGGAGGTGGTGGTTCAGGTGGTGGTTCCGGTGGTGGTAATGACCCTGCTACTGATCATTTATTTGCTAGCTCGCCTGTTCCGCCGCATTTTCTTCATCCGGTTGCGAGGCCGAATTCGGATCATTTTATGCCTTTTGTTCCTGTTCCTGCTATTCACCATCAGCAACAAATGGCTGCTGCTGCTGCTGCTCAGTATAACCGGCCGGTTGGACATTTTGGGTCGCCGCCAAATGGACACTTTGAGAATCCTTTCTTGTCTAGACAGCAACAGCATCAACAGCAACATCAAAATCAACATCAGAATCAACATCAGAATCAACATCAGCAGCAGCAGCTTCATAGGATTGGGACACAAATACATCATAGCCCTGTTGGTGGTTATGTGGAGGATATGGAATCAGCTAATGCATCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 975 0.4349 MREDDSNWFSRWEEQLPSPEELMPLSQTLITPDLAIAFDIRNNINNNNNNPLNNINHSNPQQQQQHHQNHQNQQQQPQPSSLPSSTDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGGGGGSGGGSGGGNDPATDHLFASSPVPPHFLHPVARPNSDHFMPFVPVPAIHHQQQMAAAAAAQYNRPVGHFGSPPNGHFENPFLSRQQQHQQQHQNQHQNQHQNQHQQQQLHRIGTQIHHSPVGGYVEDMESANASGGRKVLTLFPTGDD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1350 324 Gene3D - 106 168 - -
Tpr6g1350 324 Pfam Myb-like DNA-binding domain 113 161 IPR001005 -
Tpr6g1350 324 MobiDBLite consensus disorder prediction 259 287 - -
Tpr6g1350 324 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 324 - -
Tpr6g1350 324 SUPERFAMILY Homeodomain-like 106 166 IPR009057 -
Tpr6g1350 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 165 IPR017930 -
Tpr6g1350 324 MobiDBLite consensus disorder prediction 59 108 - -
Tpr6g1350 324 MobiDBLite consensus disorder prediction 59 92 - -
Tpr6g1350 324 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 324 IPR044841 GO:0003700|GO:0006355
Tpr6g1350 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 110 162 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1350 Tpr-Chr6 14292943 14295126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1350 1 324 G2-like Transcription Factor Family AT3G10760 59.143 7.88e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g1350 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1350 - - ccaj:109802866 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1350 6 14292943 14295126 Tpr6g1350 6 14292943 14295126 ECH