Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1348 ATGTGTAAAGAGACTGAAAGTTGCACGAGCAGCAGCAGCAACAATCAACGGAAAGCGGAGGAAGTGATTATTGGAAACGCAAAAGCTATTCAAAAACTCAGAGAACTCATCACATTACCTCTTCTCTTCCCTCGTGAGGCAAATAAGGTAGCTTCAGTTCAGTTCAATTGTTTTTCTCTCTTTACTTCTTTTTTATTACTTGCTGATTATTCCTTCTCATTTCTTTGCTTACAGTTGCAAACAGGGTTGTTGCTGTGTGGTCCTCCTGGCACCGGAAAGAGAAGTTTGGTAAGTGCAGTCGTTGAGGAATGTGGAGCAAATTTGACAATTATCAGCCCAGACACTGTTTACAGCACAAATGCTGGTGAAAGTGAGAGAACTCTCCGCGAGGCTTTTTCAGAGGCATCATCTCATACCGCCTTGGGCAAGTCCTCAGTTATCTTTATAGACGAAATAGACACACTTTGTCCTCCCCGAAATTCCAAAAAAGGGCAAGATGTCCGAATTGCTTCCCAACTTGGTATTTTGATGGATTCAAACAAAGCAACCTCTTCTACGCCAGGGGTAGTTGTGGTTGCATCAACTAACAGTGTTGATGCAATTGACCCTGCTTTAAGAAGATATGGACGTTTTGATATTGAAACTGATGTTACAGTCCCCAATAAAAAGGAGCGCCTTCAAATTCTAGAGCTGTATACAAGAAAGATTCCTCGAAATTCATGCGACTTAGAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTATGGGCTTTGTGTCGTGAAGCTATCAAATCTGCAATCAGAAGGTCTTTAATTGCAAAGAAAGATGTCAAAAAAGACTCTAGTTTAACGATGGAAGATTGGAAGAATGCAAGCTCTCTTGTTCAACCAAGTATAACAAGAGGCATTACTGTGGAAATTCCCGATGTGACTTGGAACGATATTGGTGGATTGAAAGACGTGAAGACAAAGCTCAGGCAAGCTGTTGAGTGGCCTATGAAGCATCCTGCCGCATTTTCAAGATTGGGAATAACCCCTAATCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAAGCTGCTGCAAATGCTGCTAATGTTCCCTTCTTTTCCTTGAGTTGTGCAGATGTACATTCAAAGTATGTCGGAGATGCAGAAAGTTATCTTCGTGAAATTTTTCGCAAAGCACGGCTTGCCGGAAAAAGTATAATATTTTTTGATGAAGTTGAGTCAGTAGCTGGCAAACGGGGTGATAGTTCGAGCAGTAGTTCCGCAGCTAGTGAGAGGCTTTTATCTACTCTGCTAACTGAGATGGATGGTTTAGAAGAAGCCAAAGGAGTCCTTGTTTTTGCAGCTACGAATCGCCCTTATTTACTTGATGCTGCACTTATGCGTCCTGGACGATTTGATATGATTTTGTATGTGCCACCGCCTGATTTGGAGGGTCGATTGGAGATACTTAATGTACACACACGTAGGATGAAATTACAGAGTGATGTTGATCTTAGAAAACTAGCAGAAGATACCGAGCTCTTCACAGGTGCTGAACTAGCAGGATTGTGTAGAGAAGTTGGAACAGCAGCTCTAAGGGAAAACATTGACGCGAGTGTTGTTTTTGACCGTCATTTCCAGATTGTTAAGAATGCTTTAAATCCATCGTTAACAAAAGAAGCAATTGATTCATACTCGTCTTTTAGGAAGACCTCATCTCGAAGCGGTTGCCTAGAATAG 1758 0.4198 MCKETESCTSSSSNNQRKAEEVIIGNAKAIQKLRELITLPLLFPREANKVASVQFNCFSLFTSFLLLADYSFSFLCLQLQTGLLLCGPPGTGKRSLVSAVVEECGANLTIISPDTVYSTNAGESERTLREAFSEASSHTALGKSSVIFIDEIDTLCPPRNSKKGQDVRIASQLGILMDSNKATSSTPGVVVVASTNSVDAIDPALRRYGRFDIETDVTVPNKKERLQILELYTRKIPRNSCDLESIAASCNGYVGADLWALCREAIKSAIRRSLIAKKDVKKDSSLTMEDWKNASSLVQPSITRGITVEIPDVTWNDIGGLKDVKTKLRQAVEWPMKHPAAFSRLGITPNRGILLHGPPGCSKTTLAKAAANAANVPFFSLSCADVHSKYVGDAESYLREIFRKARLAGKSIIFFDEVESVAGKRGDSSSSSSAASERLLSTLLTEMDGLEEAKGVLVFAATNRPYLLDAALMRPGRFDMILYVPPPDLEGRLEILNVHTRRMKLQSDVDLRKLAEDTELFTGAELAGLCREVGTAALRENIDASVVFDRHFQIVKNALNPSLTKEAIDSYSSFRKTSSRSGCLE* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1348 585 Gene3D - 220 302 - -
Tpr6g1348 585 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 28 558 - -
Tpr6g1348 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 303 IPR027417 -
Tpr6g1348 585 ProSitePatterns AAA-protein family signature. 456 474 IPR003960 GO:0005524|GO:0016887
Tpr6g1348 585 SMART AAA_5 349 488 IPR003593 -
Tpr6g1348 585 SMART AAA_5 79 221 IPR003593 -
Tpr6g1348 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 547 IPR027417 -
Tpr6g1348 585 Gene3D - 303 487 IPR027417 -
Tpr6g1348 585 CDD AAA 82 214 - -
Tpr6g1348 585 CDD AAA 319 486 - -
Tpr6g1348 585 Pfam ATPase family associated with various cellular activities (AAA) 353 485 IPR003959 GO:0005524|GO:0016887
Tpr6g1348 585 Pfam ATPase family associated with various cellular activities (AAA) 83 217 IPR003959 GO:0005524|GO:0016887
Tpr6g1348 585 Pfam AAA+ lid domain 508 552 IPR041569 -
Tpr6g1348 585 Pfam AAA+ lid domain 242 291 IPR041569 -
Tpr6g1348 585 Gene3D - 7 218 IPR027417 -
Tpr6g1348 585 Gene3D - 488 579 - -
Tpr6g1348 585 PANTHER AAA-FAMILY ATPASE 28 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1348 Tpr-Chr6 14261339 14266712 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1348 277 562 Calmodulin-binding Proteins AT3G56690 43.706 6.84e-77 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1348 - - vra:106755317 698.353