Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1336 ATGACACTCTCTCACCAAATTCAAGACTCAGAGTTTCCATTCAAAGAAATTGGAAATGAAGGTCTCACTAAACAGATTCTCAGAAAAGGTGTTACTTGGCAAACTCCATTTTCTGGTGACCAAGTTCAAGTTCATTTCAGTGGACAAGTTGAAAATGGACCATCTCTTGAATCCAGTTATGATAAAGGCTCGTCGTTTCATTTCAAATTAGGCCAAGGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCTACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTAGCATACGGTGAAGTTGGTTCTCCACCGTTGATTCCTCCTAATGCAACTCTAATTTTCGAGATTGAAATGTTGTGTTGGAGTACTATTAGGGATTTGACTGGTGATGGAGGAATCATGAAAAAGACAATAAGGGAAGGAGGAGGATGGGCTACTCCAAAAGAGCTCGATGAAGTGCTAGTGAAATATGAAGCAAGGCTTGAAAATGGAATGCTTATCAAGTCGGATAAAGGTGTCGAGTTTAATGTAAGTGATGGCTATCTTTGTCCAGCAATGAGTATAGCAGTAAAGACGATGAGAAAAGGCGAGGTCGCAGAGCTGAGCATGAAATTTTTCTATGGCCTTATTAGTCAAAATTCAAATATTACAAATGATGAGCTTGATGGTTTACCAGAATCTAACTTAATTAGCATCAAACTTGAGTTGGTATCATGGAAAGTTGTTACTGATATCACTGGAGATAAGAAAATACTGAAAAAAGTTAATAAAGCCGGCGAGGGGCATGATCGTCCTAACGAAGGATCTCACGTGAAAGTCATATATTTATGTAAAGGAGAAGATGGTACAATTATCGAGAGGAAAGGATCAAAGGAAGAACTTTTTGAGTTCACAACTCAAGAAGAACAAGTGTATGAGGGTCTAGAAAAAGCAATAATGACAATGAAAAAAGAAGAACAAGCTTTGGTGACTATCAATGCTGAATATTTGTGTGACCATAGTAATTTGCAAGGAAACAAGGCCCACAATAATAAAATTTATTATGAAGTTGAATTAATTGATTTCACTAAGGAGAAGCCATTTTGGAAAATGGACACTCAAGAGAAACTAGAAGCTTGTGAACAAAAGAAGCATGATGGAAATCTTCTATTCAAGGCTCAAAATTTTACTCGCGCATCAAAGAAATATGAAAAGGCTGTAAAATACATCGAATTTGATCACACATTTAGCGAAGACGAGAAGCTTCATGCTAACACTTTGAGATTATCGTGTAATTTGAACAATGCTGCTTGTAAACTTAAATTGGAGGAGTACACTGAAGCTGCAAGGTTATGCACAAAGGTCCTAGAACAAGATCCCTTAAATGTGAAGGCTCTTTATAGAAGATGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGATATAAAAAAAGCTTTGATTATTGATCCAAATAACAGAGAAATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAAGGAATACACTAAATATGAAGCTGATATCTTTAGTACAATGGTTTCAAAGATGAATTAG 1584 0.3668 MTLSHQIQDSEFPFKEIGNEGLTKQILRKGVTWQTPFSGDQVQVHFSGQVENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPNLAYGEVGSPPLIPPNATLIFEIEMLCWSTIRDLTGDGGIMKKTIREGGGWATPKELDEVLVKYEARLENGMLIKSDKGVEFNVSDGYLCPAMSIAVKTMRKGEVAELSMKFFYGLISQNSNITNDELDGLPESNLISIKLELVSWKVVTDITGDKKILKKVNKAGEGHDRPNEGSHVKVIYLCKGEDGTIIERKGSKEELFEFTTQEEQVYEGLEKAIMTMKKEEQALVTINAEYLCDHSNLQGNKAHNNKIYYEVELIDFTKEKPFWKMDTQEKLEACEQKKHDGNLLFKAQNFTRASKKYEKAVKYIEFDHTFSEDEKLHANTLRLSCNLNNAACKLKLEEYTEAARLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKKALIIDPNNREIKLEYKELKLKQKEYTKYEADIFSTMVSKMN* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1336 527 Pfam Tetratricopeptide repeat 461 494 IPR001440 GO:0005515
Tpr6g1336 527 SUPERFAMILY FKBP-like 18 126 - -
Tpr6g1336 527 SUPERFAMILY TPR-like 369 524 IPR011990 GO:0005515
Tpr6g1336 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 273 361 IPR001179 GO:0003755
Tpr6g1336 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 39 127 IPR001179 GO:0003755
Tpr6g1336 527 Gene3D Tetratricopeptide repeat domain 364 521 IPR011990 GO:0005515
Tpr6g1336 527 SUPERFAMILY FKBP-like 243 381 - -
Tpr6g1336 527 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Tpr6g1336 527 Gene3D - 246 363 IPR046357 GO:0003755
Tpr6g1336 527 SMART tpr_5 461 494 IPR019734 GO:0005515
Tpr6g1336 527 SMART tpr_5 427 460 IPR019734 GO:0005515
Tpr6g1336 527 SMART tpr_5 378 411 IPR019734 GO:0005515
Tpr6g1336 527 Gene3D - 130 245 IPR046357 GO:0003755
Tpr6g1336 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 155 245 IPR001179 GO:0003755
Tpr6g1336 527 PANTHER PEPTIDYLPROLYL ISOMERASE 6 247 - -
Tpr6g1336 527 PANTHER PEPTIDYLPROLYL ISOMERASE 231 343 - -
Tpr6g1336 527 PANTHER PEPTIDYLPROLYL ISOMERASE 353 527 - -
Tpr6g1336 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 269 358 IPR001179 GO:0003755
Tpr6g1336 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 36 124 IPR001179 GO:0003755
Tpr6g1336 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 151 218 IPR001179 GO:0003755
Tpr6g1336 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 247 - -
Tpr6g1336 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 353 527 - -
Tpr6g1336 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 231 343 - -
Tpr6g1336 527 SUPERFAMILY FKBP-like 132 212 - -
Tpr6g1336 527 Gene3D - 11 129 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1336 Tpr-Chr6 14092551 14096509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1336 16 526 Calmodulin-binding Proteins AT5G48570 54.159 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1336 - - gmx:100785412 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1336 6 14092551 14096509 Tpr6g1336 6 14092551 14096509 ECH