Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1333 ATGGCTGAAGACAAAAACCTCAAACGCAAAATGGAGGAAGAGCCAGAGCCAAAACTTGAGAAGGAATCAAAGGCAATGCCACCAACCTTTGAATCTAATGATGAGGATGTACTTCCTACGAGGCTTGACATTCACACCAAGTCCACTTCCAAACCTTTGGAGATTGGTGAACATTCAAGTTCATCTCATAAAGCTATTGCTCAGAACGCTGCTGATGAACCTTTACCTGAGCAGAAAGTGAGGGAATTCTGTTGTCATTACTGTGACAAGAAATTCTCCACTTCTCAAGCACTTGGGGGGCACCAAAATGCTCATAAGCGTGTGCGTGAATTCAAAAAAATGGAAGAACAAAAGAGAGAGGAAGATATGAATTCAACTCTAAGGTTTAGTTCTAGTAATCAATCTTACCTTTATCAATTTTCAAGCCCTATTCACTATCAAGGGTATTCTTATTTACATAATGCTAACTTGACTCATCCAACTGGCGCCTATACGACAATGCCTTCTTGTCCTATTGGGTCTTCTACTCACTATGGAGGATTGTATATGTCAAATGCACTCCCAACATATCCCCGATTTGTGATGCAAATGCCAATTTCATCCCCCACAACACCACAATTTAGGATAACTAGGTTTTGGGGTGGAAATCAAAATGTTGAGAGTGAAGAAAGAAATTTCAATCCTCAACATGGTTCTCAAACTCTTCAATTGTTGTCTCGGGATCTTAATGGAGAAGACACAATTCAAGCAAATCCCGATGTGTCCTCATCGTCAACTCAATCAACCTCGGAGGAAGTTAACTTGAATCTCACCCTTTAA 819 0.4042 MAEDKNLKRKMEEEPEPKLEKESKAMPPTFESNDEDVLPTRLDIHTKSTSKPLEIGEHSSSSHKAIAQNAADEPLPEQKVREFCCHYCDKKFSTSQALGGHQNAHKRVREFKKMEEQKREEDMNSTLRFSSSNQSYLYQFSSPIHYQGYSYLHNANLTHPTGAYTTMPSCPIGSSTHYGGLYMSNALPTYPRFVMQMPISSPTTPQFRITRFWGGNQNVESEERNFNPQHGSQTLQLLSRDLNGEDTIQANPDVSSSSTQSTSEEVNLNLTL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1333 272 MobiDBLite consensus disorder prediction 251 272 - -
Tpr6g1333 272 MobiDBLite consensus disorder prediction 36 52 - -
Tpr6g1333 272 SUPERFAMILY beta-beta-alpha zinc fingers 76 122 IPR036236 -
Tpr6g1333 272 MobiDBLite consensus disorder prediction 1 73 - -
Tpr6g1333 272 ProSitePatterns Zinc finger C2H2 type domain signature. 84 105 IPR013087 -
Tpr6g1333 272 MobiDBLite consensus disorder prediction 53 67 - -
Tpr6g1333 272 Pfam C2H2-type zinc finger 83 107 - -
Tpr6g1333 272 Gene3D Classic Zinc Finger 57 139 - -
Tpr6g1333 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Tpr6g1333 272 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 11 270 IPR044246 GO:0009788
Tpr6g1333 272 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1333 Tpr-Chr6 14072358 14074028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1333 77 190 C2H2 Transcription Factor Family AT1G24625 35.965 1.50e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g1333 zf-C2H2_6 6.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1333 - - cam:101490368 187.578