Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1326 TATAAAGGTCATTTTCTTGTTAAAAGTGTTCATTTTTGCCCCACCACCGGAAACTTCACTAGCCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACAGGGTCTGTTTATCCCACAAGGGATGAAACTGGCAATTTACTTGTGACCGAGTATGGATTGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAGGAAGTTCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGATGATCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATTGTCGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGACCTTAAAAACATTAAAAAGATAGCTGAAAGAGAGGATACATTTGATCTTCTTGGTAATTCACTTGCACCTTCTATACATGGACATTCTTGGATAAAGAAAGCAGTGATGTTATTGATGCTTGGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCATTTAAGAGGTGACATTAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAACTCTTGAGAGCAACCATGAATGGTGGCTTTTGTCATTTGATTCTACAGTATGATCGTTCACTTACTCCAACTAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGATTTGATCTCTTGTTTATCGTGTTGGATCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCACGTCCTTCGTATGCATCGATTTCGTTCTGCTATTGATGGAGGTGAGGCAGCACATGATGGGAGTGTAATTCATAAGGACTTCTTGAGTACAAGAAGAATTACGGATACCTGCAGACCAGAGGCAGATGCATATCCTGTCAACGAGGGTGCACAATCTTTTCCTGACGGGTCTAACAATAATGTGTATATGAAGAATACTCCACTGTCATCAAACTGTATGGGTGGCCAGAATTCGTTGTTACAGACCTCAGGATCACAACTTTTGGGAAGATCAGCTGCATCTCCTTCTGCTGCAACCAGCGCCACTTCTTTTGACAATACAACAGCTTCACCAATTCCATATTATTGCACGGCATATGCTGAGCTCAGAAATGCAAATTCAAATGCAAAGACTGGAGGAACACTTCCAATAACTGCCAGAACTTTAGAAACCATAATACCTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTGTTCGATGATCCCACGTCATTAACCGAGGAGGAGCTGTATGAATTGCGAAACAACTGGCAACTTAGTTGTGGGGATCTATTATGGGTTTAA 1398 0.4192 YKGHFLVKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDETGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAEREDTFDLLGNSLAPSIHGHSWIKKAVMLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRATMNGGFCHLILQYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSVIHKDFLSTRRITDTCRPEADAYPVNEGAQSFPDGSNNNVYMKNTPLSSNCMGGQNSLLQTSGSQLLGRSAASPSAATSATSFDNTTASPIPYYCTAYAELRNANSNAKTGGTLPITARTLETIIPLSTAHAKLKLSRKVFDDPTSLTEEELYELRNNWQLSCGDLLWV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1326 465 Gene3D - 47 137 IPR012340 -
Tpr6g1326 465 PANTHER DNA HELICASE 392 437 - -
Tpr6g1326 465 PANTHER DNA HELICASE 6 224 - -
Tpr6g1326 465 PANTHER DNA HELICASE 233 303 - -
Tpr6g1326 465 Pfam MCM OB domain 7 109 IPR033762 -
Tpr6g1326 465 SUPERFAMILY Nucleic acid-binding proteins 5 129 IPR012340 -
Tpr6g1326 465 Pfam MCM P-loop domain 147 222 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 Pfam MCM P-loop domain 233 280 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 Gene3D - 141 222 IPR027417 -
Tpr6g1326 465 Gene3D - 223 442 IPR027417 -
Tpr6g1326 465 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 51 65 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tpr6g1326 465 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 77 89 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tpr6g1326 465 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 233 303 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 6 224 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 392 437 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 SMART mcm 6 444 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 Pfam MCM AAA-lid domain 392 436 IPR041562 -
Tpr6g1326 465 ProSiteProfiles MCM family domain profile. 159 224 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g1326 465 ProSiteProfiles MCM family domain profile. 233 276 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1326 Tpr-Chr6 13933256 13937216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1326 234 297 Core DNA Replication Machinery Family AT5G46280 79.688 4.95e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1326 K02541 - mnt:21404548 419.083