Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1320 ATGACGATGTTCAGTGCATGCTGTAGAGCACTAACCCATAACCACTTTCCGTTATCCCGCTCCATCGCCCTTTCCCCTCAACCCACTGCCCTTCGATTTCAATCACCATCTTCTCTACGTCTCCCTCTTATCCGCTCTCCACCTCCCTTCAACCAATTGCGCCTCCGTCATTCTCGTCTCTCTGCTTTATCCGACGACGGTTCCGGCGCTACTGGTGGAACTAGCGGTGATGCTGGTGATGGTGGATGGAATTCCGCTTCTGGTGGAACTGGCGGTGATGCTGGTGATGGTGGATGGAATTCCGGTGACAATGAATCCGATGATGGAGGGGGAAACTTGTCCTTCTTGTCATGCATTGCAAAAAAGTTAGAGCCTATGAATACTTTAGCATCACCTGTTTGGTGGGTGTTTGGATTTTATTGCATTGCTGTCGGTGGTCAAAAACTTCTCGAAGCTGCTCTTTTTCTCTACTGCTTGACACTGATCGTTCCAATCCTTGAATTTTTTACAATCTTTCCAATCCTTCTCCAATATTTCACTATCTTTTACATCGGGATGATATGTATAGCGTTCTGCATCTACCCAATAATAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGGTTAAGAATCAGGGAAGGTTCTTCAGAAGATGATATCAGGTCACTTCCTATGTATACGTTTAGTCAGTCAAATGTAATGGTTATGGTTGATGACAACAAGAAGCAATCTGTTAAAGCAAGAACCGGTTCATACAATCAAAGCCATATCAGTGAACTATCTCTTCATCCAGATGATTCTGAATGCTGTATCTGCCTATGTCCATATGTTGATGGAACAGAACTGTATCGGCTTCCCTGTTCCCACCATTTCCATTGTGCATGCATTAGCCGTTGGCTTCGGACAAAAGCAACTTGCCCACTCTGCAAATTTAACATCCAAAGACGCAATGCATTGGTTTGA 996 0.4428 MTMFSACCRALTHNHFPLSRSIALSPQPTALRFQSPSSLRLPLIRSPPPFNQLRLRHSRLSALSDDGSGATGGTSGDAGDGGWNSASGGTGGDAGDGGWNSGDNESDDGGGNLSFLSCIAKKLEPMNTLASPVWWVFGFYCIAVGGQKLLEAALFLYCLTLIVPILEFFTIFPILLQYFTIFYIGMICIAFCIYPIIAYALRIREGASEDDIRSLPMYRLRIREGSSEDDIRSLPMYTFSQSNVMVMVDDNKKQSVKARTGSYNQSHISELSLHPDDSECCICLCPYVDGTELYRLPCSHHFHCACISRWLRTKATCPLCKFNIQRRNALV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1320 331 Pfam Ring finger domain 279 321 IPR001841 -
Tpr6g1320 331 SMART ring_2 280 320 IPR001841 -
Tpr6g1320 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 329 IPR013083 -
Tpr6g1320 331 CDD RING-H2_RNF111_like 279 323 - -
Tpr6g1320 331 PANTHER RING-FINGER UBIQUITIN LIGASE 107 220 - -
Tpr6g1320 331 PANTHER RING-FINGER UBIQUITIN LIGASE 218 331 - -
Tpr6g1320 331 PANTHER TARGET OF ERK KINASE MPK-1 218 331 - -
Tpr6g1320 331 PANTHER TARGET OF ERK KINASE MPK-1 107 220 - -
Tpr6g1320 331 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Tpr6g1320 331 SUPERFAMILY RING/U-box 273 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1320 Tpr-Chr6 13736305 13741446 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1320 100 328 C3H Transcription Factor Family AT1G68070 37.118 3.24e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1320 - - gmx:100808066 271.552