Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1316 ATGGAGGAACGACAACAACAACAACAGTGCCAGGTCATCACTCTCGGAACTAATAATCCCCTCCTCCCTGGCCCCTTCGCGCCTCGATCGGACGATGAAGACGACGCCGACGCCGGCTGCGCCTATTCCAGAGCTGTCCTCGTCGTTGACATGGTTTGGAACCTCTCCTTCGTGGTGGTTGCCGCCGCCGTCATCCTCTCCACATTAGGCGAGCATCCTTCCACTCCTCTCAGACTTTGGCTCTGTGGTTACGCCTTGGAGTGCCTTCTCCACGTCGCTTTTGTTTACTCTGAATATCGTTTCACTACTCGTGATTCCTTCTCTCACACTCCTTACAGCATTGCAAAGAAGTTAGAGCCTATGAATACTTTAGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTCGGTGGTCAACCACTTCTCGAAGATTCTCCTCGTCTCTACTGGTTGACTGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTCGCTCTCTTATGCATCATCCCAATAATAGCATTAGCTTATGCTTTAAGAATCAGGGAAGGTGCTTCAGAAGATGATATCAGGTCACTTCCTATGTATAGGTTTAGTCAGTCAAATGTAATGGTTATGATTGATGACAACAAGAAGCAACTTGTTAAAGCAAGAACCAATTCATACAATCAAAGTCATATCAGTGAACTATCTCTTCATCCAGATGATTCTGAATGTTGTATTTGCCTATGTCCATATGTTGATGGAACAGAACTGTATCGGCTTCCCTGTACCCACCATTTTCATTCTGCATGCATCGGCCGTTGGCTTCGGACTAAAGCAACTTGCCCGCTCTGCAAATTTAATATCCGAAGAGGAGGCGATACATTGGTTTGA 918 0.4521 MEERQQQQQCQVITLGTNNPLLPGPFAPRSDDEDDADAGCAYSRAVLVVDMVWNLSFVVVAAAVILSTLGEHPSTPLRLWLCGYALECLLHVAFVYSEYRFTTRDSFSHTPYSIAKKLEPMNTLASSVWWVFGFYWIVVGGQPLLEDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALLCIIPIIALAYALRIREGASEDDIRSLPMYRFSQSNVMVMIDDNKKQLVKARTNSYNQSHISELSLHPDDSECCICLCPYVDGTELYRLPCTHHFHSACIGRWLRTKATCPLCKFNIRRGGDTLV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1316 305 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Tpr6g1316 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 301 IPR013083 -
Tpr6g1316 305 SMART ring_2 253 293 IPR001841 -
Tpr6g1316 305 PANTHER TARGET OF ERK KINASE MPK-1 31 304 - -
Tpr6g1316 305 PANTHER RING-FINGER UBIQUITIN LIGASE 31 304 - -
Tpr6g1316 305 SUPERFAMILY RING/U-box 239 298 - -
Tpr6g1316 305 Pfam Ring finger domain 252 294 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1316 Tpr-Chr6 13703641 13707618 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1316 27 302 C3H Transcription Factor Family AT1G68070 45.085 7.77e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1316 - - gmx:100806994 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1316 6 13703641 13707618 Tpr6g1316 6 13703641 13707618 ECH