Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1304 ATGGATGAATTGGGAAATAGTAGCTGTTATTGGAGTAGAGAGCAAGATATAGCGTTTGAAAATGCGTTGGCAAATCATCCCGAGGAATGGGAGCAATTTGCGGCGCATGTAACTGGGAAAAGTTTGGAAGAAGTTAAGCGTCATTATGTGGATTTGATTGATGATGTTAACCACATTGAATCTGGTTATGTGCCTCTGCCGAATTATAATGAAATAAGAGCTGTCAAAAAGAGAACTAAGACTTCAAGAACTGTTCAAGAAAGGCGAAAGGGTATTCCTTGGACAGAAGCTGAACATAGGTTATTTCTTCAAGGCTTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGAACTGTGTGGTAACAAGAACACCTACCCAAGTTGCAAGCCATGCTCAGAAATATAAAATTCGACAGAATTCAAAGGAGAAGAAGAAAGAAAGAAAGCGATCCAGCATACATGATGTCACTCATGTAAAAAATGATGACATTTCACCACCTCAAGGACAGTTTATCAGTCAAGCAAGCGGCTCTGCAGCAAGTTCTGCTGGACAATCAGCCGAACAAGCTCCTCCATCCCCACCTTCTGGAATTTATGCTGCTCCTAGGATCGAGCACCCTATTGGAGGACATCTTGTATCTGCAGTTGGCACTCCAGTGAATCTTTCTGCTGCTGGACAATCAGCCGAACATCCAGCCCCACCTGCTGGAATTGATGCTGCTCCTAGGATCGAGCAACCTATTGGTGGACATCTTGTATCTGAAGTTGGAACTCCAGTGAATCTTTCTGCTGCTGGACAAACAGCCGAACAAGCTCCTCCAACCTCACCTGCTGGAATTTATGCTGCTCCTAGGATCAATCTTACTGCTGCTGGACACATGGCTTATGAACTTGGACCGGATTCTGGGGCAGTTATGCCAGGGGAACCAATGAACATTGGTCCTATGACATATCCCATGCAATATACCTATGCTCATTCATGA 990 0.4455 MDELGNSSCYWSREQDIAFENALANHPEEWEQFAAHVTGKSLEEVKRHYVDLIDDVNHIESGYVPLPNYNEIRAVKKRTKTSRTVQERRKGIPWTEAEHRLFLQGLENHGWGDWRSISRNCVVTRTPTQVASHAQKYKIRQNSKEKKKERKRSSIHDVTHVKNDDISPPQGQFISQASGSAASSAGQSAEQAPPSPPSGIYAAPRIEHPIGGHLVSAVGTPVNLSAAGQSAEHPAPPAGIDAAPRIEQPIGGHLVSEVGTPVNLSAAGQTAEQAPPTSPAGIYAAPRINLTAAGHMAYELGPDSGAVMPGEPMNIGPMTYPMQYTYAHS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1304 329 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Tpr6g1304 329 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Tpr6g1304 329 MobiDBLite consensus disorder prediction 165 194 - -
Tpr6g1304 329 MobiDBLite consensus disorder prediction 127 197 - -
Tpr6g1304 329 SUPERFAMILY Homeodomain-like 10 59 IPR009057 -
Tpr6g1304 329 CDD SANT 11 49 IPR001005 -
Tpr6g1304 329 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Tpr6g1304 329 Gene3D - 6 66 - -
Tpr6g1304 329 Gene3D - 92 143 - -
Tpr6g1304 329 PANTHER TRANSCRIPTION FACTOR KUA1 235 324 - -
Tpr6g1304 329 PANTHER TRANSCRIPTION FACTOR KUA1 10 227 - -
Tpr6g1304 329 PANTHER TRANSCRIPTION FACTOR SRM1 10 227 - -
Tpr6g1304 329 PANTHER TRANSCRIPTION FACTOR SRM1 235 324 - -
Tpr6g1304 329 MobiDBLite consensus disorder prediction 148 163 - -
Tpr6g1304 329 SMART sant 7 55 IPR001005 -
Tpr6g1304 329 SMART sant 90 140 IPR001005 -
Tpr6g1304 329 SUPERFAMILY Homeodomain-like 87 143 IPR009057 -
Tpr6g1304 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Tpr6g1304 329 CDD SANT 93 138 IPR001005 -
Tpr6g1304 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1304 Tpr-Chr6 13565818 13570990 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr6g1304 Myb_DNA-binding 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1304 - - cpap:110808612 263.848