Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1289 ATGGTGAGAAAGAGAAAGCTCGTAACTAAATCTTCTCAACCAGAGGAACCTCCACTCAAGCAACATCAACCGGAACCCGAACCGGTTCCCGAACCAGAACCTGAACCGGAGCCATACATCCCTACCGACGAATACGAAGAAGTTGAAGAAGAAGTTGAATACGAAGAAGTAGAGGAAGAAGAAGAAGTAGAAGAAGAGGAAGAAGAAGAAGAACAAGAAGAAGAAGAAATTCAAGGTGGTGGAGAGTATCAAGACGAAGACGATGAACCGATTCAGAAGCTTATAGAACCTTTCACAAAAGAACAGATCGCGAGTCTTCTTTGTGAAGCTGCTTCTAAGCATCGTGATGTTGCTGATCGGATCAGGAAAATTGCTGATGGAGATGCGTCGCATCGGAAAATCTTTGTTCATGGTTTGGGATGGGATACAACTTCAGCAACCCTAATTAATGCTTTTTCACAGTACGGTGAAATTGAGGATTGTAAAGCGGTTACTGATAAGGTTTCTGGCAAATCTAAGGGTTATGGATTTATTCTCTTTAAGAGAAGAAGTGGTGCAAGAAATGCGTTGAAGGAGCCACAGAAGAAGATTGGGAATAGAATGACGGCGTGCCAGCTGGCTTCTATTGGTCCTGTGCAGCAAACTCCGCAGCCAGTGCCACAGTTGGTTCCGCAAGGCTCGGAGTATACACAGAGGAAGATTTATGTTAGTAATGTTGGTCCTGATCTGGATGGGTCGAAGCTGTTTGGTTTTTTCTCGAGGTTTGGAGAGATTGAGGAAGGGCCTTTAGGGCTTGATAAGGTGACTGGAAAGCCGAAAGGGTTTTGTTTGTTTGTTTATAAGAGTGCTGAGAGTGCGAGGAGGGCGTTGGAGGAGCCTCATAAGGAATTTGAGGGACATATTTTGCATTGTCAGAGGGCAATTGATGGTCCTAAGGTTGTGAAGACACAACAACATCAGCAGTCGTTGCCGCAGCAACATGTGAATCCATTGAATCAATTGAATCCATTGACTCAGAGGACACAATATCAGAGAAATGACAATGTTGGATATGTTGGTGGTAGTAGTCTTGCAGTTAGCCAACCAGGAGGGCATTTAATGGCACCAACAGGACCAGCAGCCGGGTACAATCAGGCGGCTGCCTCTGGGCTGAACCCGGTGCTAACTCCTGCTCTTGGACAGGCGTTGACGGCACTGCTTGCGTCTCAGGGTGCTACTTTGGGGCTGTCTAATTTGTTAGGGAGTCTTGGAACAAGTAGTGGGGTTAATCCAGGTATTCCTGCTGCGGGACATGGAGTTCAGAATGGATACGGTGCTCAGCCTACTATAAGTTCATCAGTTATGGGAGCATATGGGAATACATTGCCACAGGCTGGGTTGCTGCAATACCCGAACCAGCAGATTGGACAAGGTGGTTCTGGAAGAGGCCAATATGGTGGTGCTGCACCTTACACGGGGCACTAG 1464 0.4672 MVRKRKLVTKSSQPEEPPLKQHQPEPEPVPEPEPEPEPYIPTDEYEEVEEEVEYEEVEEEEEVEEEEEEEEQEEEEIQGGGEYQDEDDEPIQKLIEPFTKEQIASLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLASIGPVQQTPQPVPQLVPQGSEYTQRKIYVSNVGPDLDGSKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQRAIDGPKVVKTQQHQQSLPQQHVNPLNQLNPLTQRTQYQRNDNVGYVGGSSLAVSQPGGHLMAPTGPAAGYNQAAASGLNPVLTPALGQALTALLASQGATLGLSNLLGSLGTSSGVNPGIPAAGHGVQNGYGAQPTISSSVMGAYGNTLPQAGLLQYPNQQIGQGGSGRGQYGGAAPYTGH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1289 487 SUPERFAMILY RNA-binding domain, RBD 130 214 IPR035979 GO:0003676
Tpr6g1289 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 321 IPR000504 GO:0003723
Tpr6g1289 487 Coils Coil 45 80 - -
Tpr6g1289 487 SUPERFAMILY RNA-binding domain, RBD 213 319 IPR035979 GO:0003676
Tpr6g1289 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 241 IPR000504 GO:0003723
Tpr6g1289 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 200 IPR000504 GO:0003723
Tpr6g1289 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 302 IPR000504 GO:0003723
Tpr6g1289 487 CDD RRM_RBM24_RBM38_like 232 307 - -
Tpr6g1289 487 CDD RRM_RBM24_RBM38_like 132 207 - -
Tpr6g1289 487 PANTHER GEO13361P1-RELATED 22 487 - -
Tpr6g1289 487 Gene3D - 215 326 IPR012677 -
Tpr6g1289 487 SMART rrm1_1 233 305 IPR000504 GO:0003723
Tpr6g1289 487 SMART rrm1_1 133 205 IPR000504 GO:0003723
Tpr6g1289 487 MobiDBLite consensus disorder prediction 1 86 - -
Tpr6g1289 487 MobiDBLite consensus disorder prediction 37 85 - -
Tpr6g1289 487 Gene3D - 42 214 IPR012677 -
Tpr6g1289 487 PANTHER - 22 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1289 Tpr-Chr6 13409119 13412658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1289 228 311 C2H2 Transcription Factor Family AT2G19380 35.714 1.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1289 K12741 - gmx:100784200 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1289 6 13409119 13412658 Tpr6g1289 6 13409119 13412658 ECH