Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1287 ATGTATCATGCAAAGAAGTTTCCTGAGGCAACAATGATGCCTCATAAATCTCAAGGTGGAGGAGCTGAACAGCTTGCAAATGTTGGTGTTTTGAGTGGATCTGCTGTGAAAAATGTTGCCCCTGCACCCGCACCCGCACCTTCTGGTGGTGGTGGGAAACAGCGTCTGCGTTGGACGTCTGATCTTCATGATCGTTTTGTGGATGCTATTACACAGCTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCACGTTAAAAGCCATTTACAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGTATTTCTGGCGCTGATTCTTCCCCGGGATTGCAAATCAACGACGCACTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCATGAACAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCTCAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGCCAGCCTCAGAAACGCTTTCATTGCCCCATGATAAGCACAATCATACCCAGCCAGAGCCTTCTGGGTCTAGTGACGCCCTTGCAGGCACTTTTTCTCCACTTAAGAAGCAGAGAATTGATGAAGGTCCGAAGGATGGCTTCACTGCATCCCAAGTTACAAGAGAGAGTGCAGAGAAGAATGATTGTAATGTTGGTCGTTTAGATCCGAACTTGTATGAAGATGATGATGCTGGCTTCGGATTTGATTTAGAGACAGAAAACGATGACAACAATGAGAGTGAGTAG 861 0.4506 MYHAKKFPEATMMPHKSQGGGAEQLANVGVLSGSAVKNVAPAPAPAPSGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLPASETLSLPHDKHNHTQPEPSGSSDALAGTFSPLKKQRIDEGPKDGFTASQVTRESAEKNDCNVGRLDPNLYEDDDAGFGFDLETENDDNNESE* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1287 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 53 108 IPR006447 GO:0003677
Tpr6g1287 286 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Tpr6g1287 286 MobiDBLite consensus disorder prediction 1 20 - -
Tpr6g1287 286 MobiDBLite consensus disorder prediction 113 142 - -
Tpr6g1287 286 Gene3D - 52 111 - -
Tpr6g1287 286 PANTHER OS05G0491500 PROTEIN 2 279 - -
Tpr6g1287 286 MobiDBLite consensus disorder prediction 113 130 - -
Tpr6g1287 286 Pfam Myb-like DNA-binding domain 56 106 IPR001005 -
Tpr6g1287 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 110 IPR017930 -
Tpr6g1287 286 MobiDBLite consensus disorder prediction 203 286 - -
Tpr6g1287 286 MobiDBLite consensus disorder prediction 267 286 - -
Tpr6g1287 286 Pfam MYB-CC type transfactor, LHEQLE motif 141 187 IPR025756 -
Tpr6g1287 286 Coils Coil 144 164 - -
Tpr6g1287 286 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 279 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1287 Tpr-Chr6 13377607 13382963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1287 35 203 G2-like Transcription Factor Family AT3G13040 51.163 2.20e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr6g1287 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1287 - - gmx:100783132 445.662