Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1254 ATGTCGTTCTTGAAGCCTGAGAATGCTCTCAAAAGGGCAGAAGATTTAATCAAGGTTGGGCAAAAGCAGGAAGCTCTTAATACTTTGCAGGGACTTATTACTTCGAAAAGACACCGATCATGGCAGAACACACATGAACTGATTATGTTTAAGTATGTAGAGCTATGCGTAGAGATGCGAAAAGGACAGTTTGCGAAGGATGGATTGATCCAGTATCGTTCCATATGTCAGAATGTGAATGTTAGTTCACTGGAGGAAGTGATTAAGCATTTTATCAACCTATCAACAAAGAAAGTTACACAAGCTTGTAGCGAGGGGCAGACATTAGAACAAGGCATCGATGTAGATGACTTAGAGGCATATAAAAGGCCAGAGGATTTGATGATGAGTTATGTTAGTGGAGAGAAAGGAAAGGATATATCTGATTGGGAGCTCGTTATCCCACAGTTTAAATTCCTATGGGAAAGTTACAAGATAGTGCTTGATATATTGCGGAACAACTCAAAATTTGAAGCCGTATACGCTATGACTGCTCGTCGAGCTTTCCAGTTTTGTAAGCAGTACAAAAGAAAAACTGAATTTAGAAGACTCTGTGGAATCATAAGACACCATTTGACTAATCTGATCAAATATCAGGACCAACCAGACCGACCTGATCTTTCTTCTCCTGAAAGCTTACAATTGTATCTTAGACTTGACCAACTTGAAATTGCCGCTGAACTTGAACTCTGGAAGGAAGCCTTTAGATCTGCTGAAGATATACATGGCCTAATGTGCATGGTCAGTAAAACACTGAAACCATCCATGATGAGTTCTTACTACGCTAAGTTGACCGAAATATTTTGGAGATCTTCAAGTCATTTATATCATGCATATGCATGGTTCAATCTCTTTTTGTTACAAAAGAGCTTCCACAAAAGTCCGAGTCAGAAGGATATGGAGTTAATAGCTTCAGCTGTTGTTCTATCTGCACTTTCAGTGCCTCCTTATGAAAGCAATTTAGAACTAGAGCAAGAAAAGGAGATAAATTTGAGGAGGGCTAACCTCGTATGTTTTAATAGCGAAATAACGCTCTCAAGGTCTTCACTTCTTGCTGAACTGGAATCAGAAGGTGTAATGTCCTATGCTGCACAAGAAGTGAAGGACATGTACTATCTTTTGGAACAGACATTTCTTCCCTCGGATCTTGAACTTAAAGTAACACCCTTGCTAAATAAAATTTCAAAAGTAGGGGGTATCGCTTCATCAATTTTAAACGTGCAATTATCAACATATGTCCCAGAACTTAAAAAGTTAGCTACCCTGAGGTTGCTACAACAGGTGTCTAATGTGTACCAAACGATGAAGATTGAGAACTTAGCTGGGATGATACCTTTCTTTGATTTTTCTGTAGTGGAAAAGATCTCTGTAGATGCTGTTAAACATAAATTTCTCTCAATGAAAATTGATCACATGAAAAAAGTTGTAATTTTTGGCAAGAAGAGTCTTGAGGCTGATGACTTAAGCGGTCACTTGGCCAATTTTGCTGAACAATTGAATGTGGCAAGGCAAATGATATGTCCTCCTGTTAGGAAACAATCAAAACTTGAACTATTGCTCCCATCTTTGTTAGAGGCTGTGGACAAAGAGCACAAGGTTCACCTTGCTCGAAAATTAATTATTGAGAAGAGGAAAGAAGAACAAGAACAGCAACAACTTGAAATGGAACAAGAGAAGGAAAGGATTGCTGAAGAGGCTGCAGAACAAATGCGGCTTGCAACTGAGCAAAACAATCAAAGGATCCGTCAAGAAATAGCGGAAAGAGAACATGAAAAAGCTGAAGAGCGTAGAACTGCGGAGTTGAGTTTGACTAAACAACTCCGGAAGAGACAAGAAATGAAGAATAAATGGCAGAAATTAGCTACAACCCTGGATTATCTGGAAAGAGCAAAGAGAGAAGAGGCTGCTCCGTTTATCGAAGCTGCATATCAACAACATCTAGTGGAAGAGAAGATTCTTCACGAGCATAATCAACTACAAGAGATTGAACTGAGCAAACTGCGCCATGCTGAAGACCTCAATGAGAGGAAGCGGTTCAGTCGTATGGCAGAAAATAAAGAGATATACAAAGAGATAGTTGTCAATCGTCAGCAAGTAGAATTTAACCGATTGAAGAGTGAAAGGGAACAAGAGAGGGAAAAGATGAGAAAATTGAAGTATTATCTTCAGTTGGAAGAAGAGAGACAACAAAAATTGCATGCGGAGGAAGAAGCTCGGAAGCTAGAAGAGGCTGAGAGAAAAAAGAAGGAAGAGGCTGAACGCAAAGCAAAGCTGGATGAGATTTATGAAAAGCGGAGGCAAAGAGAAAGAGAAATTGAAGAAAAGGCTGAGAAGCAAAAGAGGGAAGCATTGTTGGGCAGACCTATTGAACCAGCTTCGAGGCCTTATGAGCCTCCTGCCCGTCGTCCATTGGAGTCTGGTACTGCTGCTTCTTCAACTTCCAAAGCCCCGGCTCCAGGGAAATATGTTCCCAGGTTCCGGAGAGGAGGAGCTTAA 2535 0.4036 MSFLKPENALKRAEDLIKVGQKQEALNTLQGLITSKRHRSWQNTHELIMFKYVELCVEMRKGQFAKDGLIQYRSICQNVNVSSLEEVIKHFINLSTKKVTQACSEGQTLEQGIDVDDLEAYKRPEDLMMSYVSGEKGKDISDWELVIPQFKFLWESYKIVLDILRNNSKFEAVYAMTARRAFQFCKQYKRKTEFRRLCGIIRHHLTNLIKYQDQPDRPDLSSPESLQLYLRLDQLEIAAELELWKEAFRSAEDIHGLMCMVSKTLKPSMMSSYYAKLTEIFWRSSSHLYHAYAWFNLFLLQKSFHKSPSQKDMELIASAVVLSALSVPPYESNLELEQEKEINLRRANLVCFNSEITLSRSSLLAELESEGVMSYAAQEVKDMYYLLEQTFLPSDLELKVTPLLNKISKVGGIASSILNVQLSTYVPELKKLATLRLLQQVSNVYQTMKIENLAGMIPFFDFSVVEKISVDAVKHKFLSMKIDHMKKVVIFGKKSLEADDLSGHLANFAEQLNVARQMICPPVRKQSKLELLLPSLLEAVDKEHKVHLARKLIIEKRKEEQEQQQLEMEQEKERIAEEAAEQMRLATEQNNQRIRQEIAEREHEKAEERRTAELSLTKQLRKRQEMKNKWQKLATTLDYLERAKREEAAPFIEAAYQQHLVEEKILHEHNQLQEIELSKLRHAEDLNERKRFSRMAENKEIYKEIVVNRQQVEFNRLKSEREQEREKMRKLKYYLQLEEERQQKLHAEEEARKLEEAERKKKEEAERKAKLDEIYEKRRQREREIEEKAEKQKREALLGRPIEPASRPYEPPARRPLESGTAASSTSKAPAPGKYVPRFRRGGA* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1254 844 ProSiteProfiles PCI domain profile. 313 496 IPR000717 -
Tpr6g1254 844 Gene3D UVR domain 216 264 - -
Tpr6g1254 844 SMART PINT_4 424 515 IPR000717 -
Tpr6g1254 844 MobiDBLite consensus disorder prediction 753 800 - -
Tpr6g1254 844 Coils Coil 737 795 - -
Tpr6g1254 844 MobiDBLite consensus disorder prediction 753 844 - -
Tpr6g1254 844 Pfam PCI domain 359 493 IPR000717 -
Tpr6g1254 844 Coils Coil 549 611 - -
Tpr6g1254 844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 609 843 IPR027512 GO:0005852
Tpr6g1254 844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 2 607 IPR027512 GO:0005852
Tpr6g1254 844 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 844 IPR027512 GO:0005852
Tpr6g1254 844 Coils Coil 707 727 - -
Tpr6g1254 844 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 424 515 - -
Tpr6g1254 844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 609 843 - -
Tpr6g1254 844 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 2 607 - -
Tpr6g1254 844 Gene3D - 265 339 - -
Tpr6g1254 844 Gene3D - 340 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1254 Tpr-Chr6 12945405 12950951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1254 2 841 Eukaryotic Initiation Factors Gene Family AT4G11420 58.315 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1254 K03254 - gmx:100803796 987.638