Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1251 ATGGGAAGACCTCCTTGTTGTGACAAAGTTGGTGTCAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACGAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGAGGAAACTTCACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGATAATGATATAAAAAATTATTGGAACACACATCTAAAGAAAAAGCTCAACAAATTTCAAGCAGCTTTAGATCAACCATCAAATTCTACTACAACTTATCTATCCAAGAGTTTTAGTGATAGAAGTTTAGATATAAGCAATAATCATGCTTCATCTCTTAAGCTTAATATTACTACTCATAATTCTCATCAATCTTCTTCTTCAACTTATGCTTCAAGCACTGAAAATATTTCAAGACTTTTAGAAGGTTGGATGAGAACTTCTCCAAATTCACAAATCAAAGGAAATTACCAATATGGTCATCATCAAGATTTTCAAAGCATTAATGATGATATTATGGATGATGATGATAATAATGAGTTTGAAAATAATGGTAAGTTATTAGTGAAATCTTCTTCAGTTCCAAATCTTGAAATCCATCATCATCATAATCATCAAAAAATTAGCAAAGGTGATTTATTACAAGAAGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAACAATGGTGTTACTTGGGATAAGTCAACTTGTGATTCTATGCCTCATGAAAAGTGTTCTACTTCTTCTTCTTCTGATCATCACAAGAATAATAATAATAATAATATTAAGAATTTATGTGGTGCTCCTCCTCCATTGTCATTTCTTGAGAAATGGTTATTGGATGAAAATGTTGGACATGTAGAGGAAATGATGGAATTATCTCCAATGTTCTAA 1038 0.3333 MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFQAALDQPSNSTTTYLSKSFSDRSLDISNNHASSLKLNITTHNSHQSSSSTYASSTENISRLLEGWMRTSPNSQIKGNYQYGHHQDFQSINDDIMDDDDNNEFENNGKLLVKSSSVPNLEIHHHHNHQKISKGDLLQEGGVSHDQEFDSILSFENLNNGVTWDKSTCDSMPHEKCSTSSSSDHHKNNNNNNIKNLCGAPPPLSFLEKWLLDENVGHVEEMMELSPMF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1251 345 CDD SANT 69 112 IPR001005 -
Tpr6g1251 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr6g1251 345 CDD SANT 16 61 IPR001005 -
Tpr6g1251 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tpr6g1251 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr6g1251 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr6g1251 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 337 - -
Tpr6g1251 345 PANTHER TRANSCRIPTION FACTOR MYB60 1 337 - -
Tpr6g1251 345 Gene3D - 68 139 - -
Tpr6g1251 345 SMART sant 66 114 IPR001005 -
Tpr6g1251 345 SMART sant 13 63 IPR001005 -
Tpr6g1251 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr6g1251 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr6g1251 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr6g1251 345 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1251 Tpr-Chr6 12905782 12907986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1251 1 119 MYB Transcription Factor Family AT5G62470 89.916 6.74e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g1251 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1251 K09422 - gmx:100802204 433.335