Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1232 ATGATGAGTTCACAAAACTTCAACAATGGTCATATCACTGATATGGCTCTTTTCCCTTTAGCTCCTATTCCTCATTCTTCTCATTCTTTGACAAATCCTGAAATGGGTCTTCAGATTTTGAGACCCTCTTTGTTTCAGTCCAAAGAGATGAAGGAAACAAAGGAAGAAGATGTTTACTTTGGGATTCATAGCAAAAACTTGTCTTTGAAACTTGGTGATGAAGAAGTAGAAGAAAAAAGCTCTGTTTCTGTGAAGATTGGTTACTCCAAACTTTGTTCTAGAGGTCATTGGAGACCAGCTGAAGATGCAAAACTTAAGGAACTTGTTGCTGAATATGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGATGGAAGATCAGGAAAAAGTTGCAGATTAAGGTGGTTTAATCAACTAGACCCAAGAATCAACAAAGGAACTTTTTCTGAGGAAGAAGAGGAAAGACTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATGATTGCAAGACTTTTTCCAGGAAGAACAGATAATGCAGTGAAGAATCATTGGCATGTGATTATGGCTAGGAGGCATAGGGAACAGTGTAGTGTGTATAGAAGGAGAAAACCAGTTTTTGAAAGCATTTCAAAGGGTTTGAAATTGAGTCTTTCAAACAATGCGGCAAGTGATTCAACTATCTCAAGCACCATTGATGGAAATGCATCAGCTAGAACTAATCTCTCACTCACTCCGTCTTCGGCTAATCTAAGTCCTCAACTGTTTCATAAACTTGTGACTCCAGTTCCTAATCACCAAGGCCATGGATCCCTAATTATGGGTAAGTCTAGAGAAAATGTGGTTGCAACTAGGGATGCAAGTTTTGACAAATATTTTGGAGCTAGTAAGAAGCAAGAGCAAGTGGAAAAGCTAAAGGTAATAGATGTGGTCCAGTCCAATTTTTCAGATTCAAACTCAGAAGTATCAGCATCTGAGTCAGTTACAACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATATTGGTGTTAAGAATTTTAACATGTTACCATTCATTGATTTTCTTGGAGTAGGAGCTTTACACAGCTAA 1104 0.3768 MMSSQNFNNGHITDMALFPLAPIPHSSHSLTNPEMGLQILRPSLFQSKEMKETKEEDVYFGIHSKNLSLKLGDEEVEEKSSVSVKIGYSKLCSRGHWRPAEDAKLKELVAEYGPQNWNLIAEHLDGRSGKSCRLRWFNQLDPRINKGTFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREQCSVYRRRKPVFESISKGLKLSLSNNAASDSTISSTIDGNASARTNLSLTPSSANLSPQLFHKLVTPVPNHQGHGSLIMGKSRENVVATRDASFDKYFGASKKQEQVEKLKVIDVVQSNFSDSNSEVSASESVTTNRSNISISGESENIGVKNFNMLPFIDFLGVGALHS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1232 367 Gene3D - 94 145 - -
Tpr6g1232 367 ProSiteProfiles Myb-like domain profile. 141 191 IPR001005 -
Tpr6g1232 367 CDD SANT 97 138 IPR001005 -
Tpr6g1232 367 Gene3D - 148 206 - -
Tpr6g1232 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 195 IPR017930 -
Tpr6g1232 367 PANTHER OS08G0435700 PROTEIN 51 364 - -
Tpr6g1232 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 140 IPR017930 -
Tpr6g1232 367 ProSiteProfiles Myb-like domain profile. 94 140 IPR001005 -
Tpr6g1232 367 PANTHER MYB PROTEIN-RELATED 51 364 - -
Tpr6g1232 367 SUPERFAMILY Homeodomain-like 94 187 IPR009057 -
Tpr6g1232 367 SMART sant 93 142 IPR001005 -
Tpr6g1232 367 SMART sant 145 193 IPR001005 -
Tpr6g1232 367 CDD SANT 157 188 IPR001005 -
Tpr6g1232 367 Pfam Myb-like DNA-binding domain 97 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1232 Tpr-Chr6 12648895 12651830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1232 72 258 MYB Transcription Factor Family AT5G17800 56.345 1.41e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g1232 Myb_DNA-bind_6 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1232 K09422 - gmx:100791795 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1232 6 12648895 12651830 Tpr6g1232 6 12648895 12651830 ECH