Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1228 ATGGCAGACCCTACATCATCCATCAACAATTTCCTTTCAAGAGAAGGTGCAAAAAGACATTACCCCCAGTTACTGCAACCACCTAATTCACCACGCAGTTTTCAATGCCATTTCTGCCACCGAAACTTCTACTCGTCTCAAGCACTTGGAGGACACCAGAACGCACATAAACTCGAGAGAGCAGCTGTAAGGAGATCAACTAATCCCCTCATCCATTTTCATTATCATAATAATAATGGGCCCTTTCACTCTTCTTCTCTCAGGCCCAAGCCCAAGCCCAAGCCTGAATTAGCAAATTTTCCCTTTTTCCACAATTACCCTTACTTGCTTGAAGTTGAGCCTTTTCATCACAATGCTCCTCCTGCTTCTCCTCAACCTTCTAACCATGTCAATCTTGACCTCACTCTTCGCTTGTGA 417 0.4436 MADPTSSINNFLSREGAKRHYPQLLQPPNSPRSFQCHFCHRNFYSSQALGGHQNAHKLERAAVRRSTNPLIHFHYHNNNGPFHSSSLRPKPKPKPELANFPFFHNYPYLLEVEPFHHNAPPASPQPSNHVNLDLTLRL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1228 138 MobiDBLite consensus disorder prediction 119 138 - -
Tpr6g1228 138 MobiDBLite consensus disorder prediction 122 138 - -
Tpr6g1228 138 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Tpr6g1228 138 PANTHER ZINC FINGER PROTEIN JAGGED 21 122 IPR045320 GO:0003700
Tpr6g1228 138 PANTHER ZINC FINGER PROTEIN KNUCKLES 21 122 - -
Tpr6g1228 138 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Tpr6g1228 138 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1228 Tpr-Chr6 12574756 12575175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1228 31 138 C2H2 Transcription Factor Family AT5G57520 38.596 2.41e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1228 - - mtr:MTR_7g086860 184.882