Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1221 ATGGTTTTCTGCGATCATTGTGTCACAGACGTTATCGCTGAAAGATACGATGATTGTTACTTAACTTGTACTTCTTGTGGGAAGGTGTTGGAAGATCAATTTTTTTCTGAGGAGCCAGTTTTTTTTAAAAACTTGGCCGGACAGAGCAAATTATCGGGAACTTACGTCCAATCGGTTCAAAGAGAGATCTCTGAATCACGTCGAAGGACTTTATATAGAGCTTCTAAAGAAATGGAATATTTAAGTCTCAACCTTGGAGTAACTGACGATAATATGGTCAGCCAAGCTTTGGCCTTCTATGAAATAGCACTTGCAAAAAATTTCACCCGGGGACGTAAATCAGAGCAAGTACAGGCTGCATGTCTCTATATTGCATTTCGGCAAAATAAAAAGCCATACTTTCTTATTGAATTTTCAAATAGTTTAAGGATAAATGTCTACAAACTTGGAGAAGTTTTTTTGCAGCTTTGTGAAGTTTTAAGGCTTAATAATCACCCTCTTGTTAAAAAGCCTATTGATCCCTGTCTTTATCTTTATAAATATACTAGTAATTTGTTAGGCCACAGAAATGGGGTTGTCTCTGAAACTGCACTGAGCATTATCGCGGATATGAACCGTAACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGCTGCTGCATTATTCATCTCCAGCAATGGACATGGTCATAACATCTCTAAGGCAGATATTCTAAGACTATTCCATGTATGTGAGGCAACATTGACCAAGCGATTGATAGAATTCGAGAATACAGACTCTTCTAGCTTGACAGTTGAGGAGTTGAATGCAATGGCAAAAGAGTATGAAAAAAATCCAGTTGTGTTGCCAAACAGTGAATTTAAAGGATCTACTTCAGACGATCTAGTGTGTGAGCACAAAGATAGCGATGTGCCCTGTTTTGCACTTGGACTATGTGAAGCTTGTTACAAGGATTTTGATAAGCTCTCGGGAGGATTTGGTGGTGGATTGGACCCTCCTGCGTTCCAGCGTGCTGAGAGGGAGAGAGTAAAGAAAACAGTTTCGAAGGAAAGGGCAGATGTGGTGAAGACATCAAATAGTGCATGCAAGGGACGAAAAGAAGATTTGCCTGCCTCTGTAGAAAGGGATGACACCAGTGCGGAAGATGACACCAGTGCAGAAGCTGAAGATGAATCAGGAAATTTCTCTGATATCGATGACCAAGAGGTTAACGGGTACCTTTTCAACGAGGAAGAGAAACATTACAAGAAGATATATTGGGAAAATGAGAACCGCGAGTATCTTGCGGAGCAAGCAGTAAAGGAAGCAGCTGCCGCAGCTGCTAAGAAAATTTATGAAGCAAATTTGAAAAACTGTCCAGTAGAATCAAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGAGGCGAGCTCAGCAGGCAAAAAATTCAGGGCCTGCTAAATCTGCTGCAGAAGCCGCCTGTCAAATGGTGAAAAAAAAGAAGCTCAGTAGCAAGGTCAATTTTGAGTGCCTGGCAAAATTATTTGAAGACGAACCAGCAGATGCGCGTAATCCCAAGAAAGTACGATTTGATCTAGCCTCTGATAATCATGACAAATTTCAGTCTAAGGTTCAGGACCCAAAGGATGATGAGCTTGGATCAGAGGATAATTTTGAGGATGGTGACAAGGATTGGTGTAATAATGAAAATATGGATGAGGCATATATCCCTGAGCAAGATGGTTATAATTATGATGAGGATCATTATTACTGA 1773 0.405 MVFCDHCVTDVIAERYDDCYLTCTSCGKVLEDQFFSEEPVFFKNLAGQSKLSGTYVQSVQREISESRRRTLYRASKEMEYLSLNLGVTDDNMVSQALAFYEIALAKNFTRGRKSEQVQAACLYIAFRQNKKPYFLIEFSNSLRINVYKLGEVFLQLCEVLRLNNHPLVKKPIDPCLYLYKYTSNLLGHRNGVVSETALSIIADMNRNWMQTGRKPSGLFAAALFISSNGHGHNISKADILRLFHVCEATLTKRLIEFENTDSSSLTVEELNAMAKEYEKNPVVLPNSEFKGSTSDDLVCEHKDSDVPCFALGLCEACYKDFDKLSGGFGGGLDPPAFQRAERERVKKTVSKERADVVKTSNSACKGRKEDLPASVERDDTSAEDDTSAEAEDESGNFSDIDDQEVNGYLFNEEEKHYKKIYWENENREYLAEQAVKEAAAAAAKKIYEANLKNCPVESRELYESTTAAVAKSRKRRAQQAKNSGPAKSAAEAACQMVKKKKLSSKVNFECLAKLFEDEPADARNPKKVRFDLASDNHDKFQSKVQDPKDDELGSEDNFEDGDKDWCNNENMDEAYIPEQDGYNYDEDHYY* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1221 590 MobiDBLite consensus disorder prediction 339 398 - -
Tpr6g1221 590 MobiDBLite consensus disorder prediction 524 551 - -
Tpr6g1221 590 MobiDBLite consensus disorder prediction 362 381 - -
Tpr6g1221 590 MobiDBLite consensus disorder prediction 382 398 - -
Tpr6g1221 590 Gene3D Single helix bin 372 440 - -
Tpr6g1221 590 MobiDBLite consensus disorder prediction 339 354 - -
Tpr6g1221 590 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 519 IPR029529 GO:0000126|GO:0000995|GO:0006383
Tpr6g1221 590 Pfam Brf1-like TBP-binding domain 398 516 IPR011665 -
Tpr6g1221 590 Gene3D - 63 165 - -
Tpr6g1221 590 Gene3D - 173 264 - -
Tpr6g1221 590 CDD CYCLIN 96 140 IPR013763 -
Tpr6g1221 590 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 519 IPR000812 GO:0006352|GO:0070897
Tpr6g1221 590 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Tpr6g1221 590 Pfam Transcription factor TFIIB repeat 172 259 IPR013150 GO:0017025
Tpr6g1221 590 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Tpr6g1221 590 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Tpr6g1221 590 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Tpr6g1221 590 SUPERFAMILY Cyclin-like 84 163 IPR036915 -
Tpr6g1221 590 MobiDBLite consensus disorder prediction 524 590 - -
Tpr6g1221 590 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1221 Tpr-Chr6 12452569 12468005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1221 1 500 Inorganic Solute Cotransporters AT2G01280 40.039 7.49e-93 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1221 K15196 - gmx:100817609 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1221 6 12452569 12468005 Tpr6g1221 6 12452569 12468005 ECH