Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1205 ATGCGCAACAACAATTCACAAGGTAGCAGAAGCAACAACAACAACAACAACAATATGAGCATTCTATCTTCCCGAACAAGTTCACGTTCTGTAACAGAAACCGTTAACGGTTCACACAAGTTCGTAATTAAGGGATATTCACTTGCAAAAGGAATGGGAGTTGGAAAACACATAGCCAGCGAAACTTTTACCGTCGGTGGTTATCAATGGGCAATTTACTTTTATCCCGACGGTAAAAATCCTGAAGATAATTCTGCATATGTTTCTGTTTTCATTGCTCTTGCTTCTGAAGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAAAGTCCTAATGCTAAACATAAGGTTCATAGTCACTTTGATCGATCTCTTGAAAGTGGTCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGTTATAAGCGGTTTTTCAAACGTGCTCAACTTGAGGCCTCGTCCTTCCTTAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCCAAACTGACCACCATACATGTGCCTGAATCTGATATTGGATCGCATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGTGGAGAAAGGTTTCATGCACACAAGCTTGTTATGGCAGCTCGGTCACCTGCATTTGAAGCTGAGTTTTTCAATCAGATGGAGGAAGATGACTGTGATATAGTTGTTACAGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAAAGACACTCTTATAGAAGATGAAGAGTTCTTCATGTCACGCTCATCATTCCTGTCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGAAATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGCTATCATGCTACGGAGTTGAAGTCCATCTGTCTACAGTTTTCTGCTGAAAACCTTGTTGCTGTGATGCAGTCTGATGGTTTTGAGTATCTAAAGGAAAACTGTCCGTTGCTGCAATCAGAACTGCTTAAGACAGTTGCAGGAGGCGAAGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGCGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTGTAAGACAACAAACCTGGGAAAACGGAGTTGAAAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGGCGTTAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1311 0.4134 MRNNNSQGSRSNNNNNNNMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNAKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSPAFEAEFFNQMEEDDCDIVVTDMEPKVFKALLHFIYKDTLIEDEEFFMSRSSFLSSISETFAAKLLAAAEKYDLPRLKLMCESVLCKEISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETVRQQTWENGVERGQNLWVNLSDGVNNDRSPGQEA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1205 436 SMART BTB_4 206 317 IPR000210 GO:0005515
Tpr6g1205 436 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 20 390 - -
Tpr6g1205 436 SUPERFAMILY POZ domain 183 316 IPR011333 -
Tpr6g1205 436 CDD MATH 37 170 IPR002083 GO:0005515
Tpr6g1205 436 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 390 IPR045005 GO:0016567
Tpr6g1205 436 CDD BTB_POZ_BPM_plant 192 314 - -
Tpr6g1205 436 Gene3D Potassium Channel Kv1.1; Chain A 182 311 IPR011333 -
Tpr6g1205 436 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 174 IPR008974 GO:0005515
Tpr6g1205 436 SMART math_3 41 153 IPR002083 GO:0005515
Tpr6g1205 436 Gene3D - 316 390 - -
Tpr6g1205 436 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Tpr6g1205 436 MobiDBLite consensus disorder prediction 1 32 - -
Tpr6g1205 436 SUPERFAMILY TRAF domain-like 33 172 - -
Tpr6g1205 436 ProSiteProfiles BTB domain profile. 206 272 IPR000210 GO:0005515
Tpr6g1205 436 CDD BACK_AtBPM-like 314 375 IPR034090 -
Tpr6g1205 436 Pfam BTB/POZ domain 198 315 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1205 Tpr-Chr6 12196325 12201826 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr6g1205 BTB 1.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1205 K10523 - gmx:100809683 755.362