Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1164 ATGGAAATTCAATTTCAGCAACCAAACATGCAGAATCAAAAAGCAGGAATTTCTGTAACAAACAAAGGAGGAAAGTTCAAAGGAAGAAACAGAAACAGCAATAACACAAACAAATTTGTTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCTAGAGCTTACGATGAAGCCGCGTGTCTACTTCGAGGTTCGAACACTCGAACCAACTTCATCACTCATGTTTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGACAAAAAACAGGAAAATGATGTTGCTTCTTCAGCAAGTAACAGCAATACTAGTAATGCTAGCACCGTTAGTAATACTAATACAATTACAAGCAATGATGATAACAAGGAGAGTGCTGTTTCAAGTGAAGCTACTCAAAAAACAGAACTTTTTGAGGATGTTTATAAACCTGATTTGAGCAATTTCAAGGAAGATTTTGAGTCAGGTTCGAAATCCAACATTTCGTGGGGTTTCGGACCTGTCTTTGATCATTTTCCTTTTGCTCAATTATTGGATATATCTAAGACTAATGGCATGAATGATGCATCTAACTTGGAACTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTCCATGAGTACATGGAAACTGTTCATGAATCCAATGAAGCTTTATGGGATCTTCCACCTTTGTGCTCATTGTTCTGTTAA 816 0.3738 MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKKQENDVASSASNSNTSNASTVSNTNTITSNDDNKESAVSSEATQKTELFEDVYKPDLSNFKEDFESGSKSNISWGFGPVFDHFPFAQLLDISKTNGMNDASNLELSEFERMKVERQISASLYAINGVHEYMETVHESNEALWDLPPLCSLFC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1164 271 MobiDBLite consensus disorder prediction 124 162 - -
Tpr6g1164 271 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 12 258 - -
Tpr6g1164 271 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Tpr6g1164 271 MobiDBLite consensus disorder prediction 114 162 - -
Tpr6g1164 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 258 - -
Tpr6g1164 271 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Tpr6g1164 271 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Tpr6g1164 271 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Tpr6g1164 271 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Tpr6g1164 271 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Tpr6g1164 271 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Tpr6g1164 271 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1164 Tpr-Chr6 11747076 11748094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1164 25 271 AP2-EREBP Transcription Factor Family AT5G19790 44.314 2.17e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g1164 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1164 K09286 - gmx:100796898 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1164 6 11747076 11748094 Tpr6g1164 6 11747076 11748094 ECH
Tpr6g1164 6 11747076 11748094 Tpr5g0465 5 7040278 7041482 PCT