Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1144 ATGGCTATCAATCCTTCTCTTCAATTTGGATATCAAGGAAACACAGAGTCAAACCCTTGCGGTTTGGAGTCAGCAGCACCAGCTACGCTTTTAATCAAACACCTTCCAGACGCTATTCCTCATGACACTCTTTCTCGACTCTTATCCCATTACGGCGCTTCCTCTGTTCGTCCTTGCTCTACTGGAAGGTTGAGAAATTGTGCTTTTGTGGATTTCAAAAATGATATGCTAGCATCTCAAGCACAGCGTCAACTAAACGGGTTAAAATTTCTTGGTAAAGTGTTGTCAGCAGAGAGAGCTAGTAAGCCAAATGAGAATGCGGGAAAAAGCAGTGGAACTCAGCTTCGAAAAGACTCTAAAACATCAGCACTGAAGAGTGAAAATGTAACCAAACCTATTGACGGAGATACAAAATCAGGAGGCCTACCTATCCCCGAGCCAATTGCCCATAGACTTGGTGTTGATTACCCATTTCCTCCTCATCTTGAGTATGCTTATCCTCCACCAGATGGAAATATACTGACCAACATCGTGAATGCTCTAATTGCTGTTCCTCGCTTTTATACTCAGGTTCTACACTTGATGAATAAAATGAACATTCCGGCTCCATTTCGCATGGCATTACCTACGCCACCATTACCTCCAGAGGTGCCAGCCCCACCTCTACCTGTGCCTCCTCCTCATTCTGTAACCACAAAACCTCAGTCTGCAGCTATGTCTAGTGATGAATCAGAAATGGAATCCTCAGATGAGGATGGTGGAGCAAGAACTCAAAATTCTGGACGGAAGCGTGCCAGGCGTGGGGCCATTGTTGGCCCTGCTATTGATAAAGATGTGGCTCATGAGGCTGTTGGAGTAAAACCGGCCACCTTGATCCCAAAAAAAATCCCGATGATTAAAAAGAACCCCGTCTTAAAGATAAAAATTGCTCCCAAAGCAACCCTGGATGAACATAAGGAGACTGGCACTGGACAAGAGTTACCAGAGCCAGAAAAAGATACTTTAGATCCCAACAAATTTTTGACTCCTGATGAATTAGAGAAAGGAAAATTGCCTCCTGAGGAAATCTTATCTCTTCCAATGTTTAAGAACTATTTACCGGGAAATCCTGCTTCTGTGTTGTATATTAAGAATTTGGCGAAAGATGTGATTGCTGATGATTTCTATCTTTTATTTGGGTCCTTCTTTGGAAGTACTGAGGCTGCAAAGTCTGATCTTCAAGTCAAACTGATGCAGGAAGGAAGGATGAAGGGTCAAGCTTTTTTAACATTCCCCTCCATAGAACTAGCTCATCGTGCTCTGAATGTAGTGAATGGATATGTATTCAAAGGCAAGCCAATGATCATTCAATTTGGCCGGAAGGGAACTTAA 1371 0.4311 MAINPSLQFGYQGNTESNPCGLESAAPATLLIKHLPDAIPHDTLSRLLSHYGASSVRPCSTGRLRNCAFVDFKNDMLASQAQRQLNGLKFLGKVLSAERASKPNENAGKSSGTQLRKDSKTSALKSENVTKPIDGDTKSGGLPIPEPIAHRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPLPVPPPHSVTTKPQSAAMSSDESEMESSDEDGGARTQNSGRKRARRGAIVGPAIDKDVAHEAVGVKPATLIPKKIPMIKKNPVLKIKIAPKATLDEHKETGTGQELPEPEKDTLDPNKFLTPDELEKGKLPPEEILSLPMFKNYLPGNPASVLYIKNLAKDVIADDFYLLFGSFFGSTEAAKSDLQVKLMQEGRMKGQAFLTFPSIELAHRALNVVNGYVFKGKPMIIQFGRKGT* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1144 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 102 IPR000504 GO:0003723
Tpr6g1144 456 MobiDBLite consensus disorder prediction 101 140 - -
Tpr6g1144 456 CDD RRM1_RBM40_like 29 100 IPR034147 GO:0005515
Tpr6g1144 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 95 IPR000504 GO:0003723
Tpr6g1144 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 446 IPR000504 GO:0003723
Tpr6g1144 456 PANTHER UNCHARACTERIZED 21 454 IPR045164 -
Tpr6g1144 456 MobiDBLite consensus disorder prediction 226 269 - -
Tpr6g1144 456 CDD RRM2_RBM40_like 372 452 - -
Tpr6g1144 456 SUPERFAMILY RNA-binding domain, RBD 28 453 IPR035979 GO:0003676
Tpr6g1144 456 MobiDBLite consensus disorder prediction 103 119 - -
Tpr6g1144 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 454 IPR000504 GO:0003723
Tpr6g1144 456 Gene3D - 10 117 IPR012677 -
Tpr6g1144 456 SMART rrm1_1 373 450 IPR000504 GO:0003723
Tpr6g1144 456 SMART rrm1_1 29 98 IPR000504 GO:0003723
Tpr6g1144 456 Gene3D - 368 456 IPR012677 -
Tpr6g1144 456 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 21 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1144 Tpr-Chr6 11508551 11527941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1144 355 454 Eukaryotic Initiation Factors Gene Family AT3G16380 28.431 4.16e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1144 K13157 - gmx:100814307 664.455