Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1143 ATGGCAATTGCACGCACTGGAGTCTACGTTGACGACTATTTGGAGTATGCAAACACATTACCCGCTGAACTTCAGAGACTTCTCAACACCGTTCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAAACAAGGCAACAGACAAAGTACTGTATGGGGTTCTCATCTCATGGCTCTAAGAAGGGTAATCATAATCATAATTATAATAATAATTACGCGAATGAGGATGATGATGCTTCCATTGAGAAAATGAGAAAAGAAATTGAAGTAAATCAGGATAGTGCATTGAGTCTATGCACTGAGAAGGTTTTGTTGGCCCGGCAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAGCTTTGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACAAGATGAACCAGCCATTCTTCCCCCGTTGCCTATTGTCCCTAAACCTGAAAAGCGCAGGCACGCATATGGTACACCTCAGTCGAAGAGACTTGATTACAGGGAAAGAGACTGGGATAGAGACTTTGAGCTAATGCCACCACCAGGAAGCCATAAGAAGGACTATTTGACCCCTATGGATATTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCATGCGTCGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACGTGCAGATTACTACCACATTGTCTATGA 798 0.4223 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHNHNYNNNYANEDDDASIEKMRKEIEVNQDSALSLCTEKVLLARQAYELIDSHVKRLDEDLNSFAEDLKQEGKIPQDEPAILPPLPIVPKPEKRRHAYGTPQSKRLDYRERDWDRDFELMPPPGSHKKDYLTPMDIDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPHCL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1143 265 PANTHER PHD FINGER PROTEIN ING2 2 261 - -
Tpr6g1143 265 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
Tpr6g1143 265 SMART PHD_3 211 259 IPR001965 -
Tpr6g1143 265 SUPERFAMILY FYVE/PHD zinc finger 186 260 IPR011011 -
Tpr6g1143 265 Coils Coil 24 44 - -
Tpr6g1143 265 SMART ING_2 9 128 IPR024610 -
Tpr6g1143 265 MobiDBLite consensus disorder prediction 140 164 - -
Tpr6g1143 265 CDD ING_plant 19 125 - -
Tpr6g1143 265 CDD PHD_ING 211 258 - -
Tpr6g1143 265 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 127 IPR024610 -
Tpr6g1143 265 Pfam PHD-finger 211 259 IPR019787 -
Tpr6g1143 265 ProSiteProfiles Zinc finger PHD-type profile. 209 261 IPR019787 -
Tpr6g1143 265 Gene3D - 5 126 - -
Tpr6g1143 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 260 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1143 Tpr-Chr6 11501918 11504764 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr6g1143 ING 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1143 K11346 - gmx:100787916 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1143 6 11501918 11504764 Tpr6g1143 6 11501918 11504764 ECH