Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1141 ATGGATGTTTGCCAAAATGTATCAGTTTCTGATGAGTGCAAGCAAGAAAAGATTCTTAACCCTTCAAATAGCCTTGATGACCTTTTTTCTGCTCAAAACATGGAAGTGAATGTTGAAATGGAATGGCTTTCAGTGTTTGTTGAAGATTGTTTTTCAAGCCCACAAAGTTGTGTCTTGTTACCTTCAAATGTTCAAAACACAACAAACACAATCATTACCTCAAAACCTTCAAACACAACAAAGAAACCAAATCAACAAGAACAAAATGAGTCACCAATGCAAAATTTCACAGTACCAGGAAAAGCAAGAAGCAAAAGAAAGAGACTTTCAGCACCAAGAAGACCAAAAAACCCATTAAGCATTTTATCAAACACCTTAAACCCACAAAATGAATCACTTTGTTCTGACCCACCTCTTCTCAAACAAACCTATTGGTTAGCTGATAGTGAACTCATTGTACCTAAAGATGTAACAAAAGATGATTGTGAAGTAATTGAACAAGAAATTGTGAAAAAGGAAAAGTTTGATTTTGAGGGTTTTGAGGAGAATAATAATGATGTTAACAACAACAACAATGGTTCAAATTCAATTCCAACAAGGAGGTGTACACATTGTTTATCACAAAAAACACCACAATGGAGGGCAGGCCCATTAGGCCCAAAAACATTATGCAATGCTTGTGGTGTTAGGTACAAATCTGGAAGATTATTGCCTGAATATAGGCCTGCTAAGAGTCCTACTTTTGTGAGCTATTTGCATTCAAATTCACATAAGAAAGTTATGGAAATGAGGATGAATGTTGAATCTTCTAATCCTAGTGAGTAG 825 0.3539 MDVCQNVSVSDECKQEKILNPSNSLDDLFSAQNMEVNVEMEWLSVFVEDCFSSPQSCVLLPSNVQNTTNTIITSKPSNTTKKPNQQEQNESPMQNFTVPGKARSKRKRLSAPRRPKNPLSILSNTLNPQNESLCSDPPLLKQTYWLADSELIVPKDVTKDDCEVIEQEIVKKEKFDFEGFEENNNDVNNNNNGSNSIPTRRCTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVESSNPSE* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1141 274 Pfam GATA zinc finger 202 236 IPR000679 GO:0006355|GO:0043565
Tpr6g1141 274 MobiDBLite consensus disorder prediction 70 98 - -
Tpr6g1141 274 Gene3D - 194 265 IPR013088 GO:0006355|GO:0008270
Tpr6g1141 274 CDD ZnF_GATA 201 248 IPR000679 GO:0006355|GO:0043565
Tpr6g1141 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 273 - -
Tpr6g1141 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 260 - -
Tpr6g1141 274 MobiDBLite consensus disorder prediction 70 125 - -
Tpr6g1141 274 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Tpr6g1141 274 SMART GATA_3 196 250 IPR000679 GO:0006355|GO:0043565
Tpr6g1141 274 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Tpr6g1141 274 PANTHER GATA TRANSCRIPTION FACTOR 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1141 Tpr-Chr6 11468593 11470300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1141 8 268 C2C2-Gata Transcription Factor Family AT4G32890 39.630 2.36e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr6g1141 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1141 - - gmx:100786479 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1141 6 11468593 11470300 Tpr6g1141 6 11468593 11470300 ECH
Tpr6g1141 6 11468593 11470300 Tpr5g0491 5 7337510 7339565 PCT