Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1133 ATGGAAGAACCAATTGTTGTTAACAAAGGTGAAGATCAAGTTCTTGATTTGCCTCCAGGTTTCAGATTCCATCCAACAGATGCTGAGATTATTGTTTTCTATCTCACTGAAAAGGTTAAAAATAGTAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAAGAATGGTACTTTTTTTGTCAGAAAGATAGAAAATATCCAACAGGGATGAGAACTAATAGAGCAACAGTTTCTGGTTACTGGAAAGCTACAGGAAAAGACAAAGAGATTTATCACAAAGGAAAATCAAATCTTGTTGGTATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCAAAAGGAGAAAAAACTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCTACTCACAATCTTCCTAAAGCCGAAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAGAAACCTCAAATTTCTGGTCTTTTAAGGATAAACTCAATTGGTCATGATGATCTTCTAGATTATTCATCACTTCCACCTCTCATGGATCCTTCATACACAAATGATGATTTCAAAGGAATTACAAATCAACAAATTTCATCAACAAAATCACAATCAGATGGATATTATCTTCCAAGCTTCTCAATCAACAATCAACAAAATCAATTTGTTATGAAGCCAGAAGATAATTACCATAGAATAATTAACTATGATAATCATCATCATCATCATCATCATGAGATTAATCCAACCATGAACAACTACACTTTAAATTCCAATTCCAATTCCAATCAAACAAATCTCAACAACCCAATTGGAAACACACTCTCACAACCTCAAATCCGAATCCAAAATCCAAACTTGAATTACTTTATGTATCAAAATAGGATTAATCAAAGTTCCATCCCAACAACAACATTTGGAAACAATAATGAGTGCAAAATGGAACAATTCTCTTCAAACCAATCACAAGATACAGGTCTTAGCAATGACACATCATCGGCCGTATCGAAGCAAGACATGGGAAGGAATAGGACAATGTATGAAGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGGAAAGTTTTTGGGACTATTGA 1170 0.3504 MEEPIVVNKGEDQVLDLPPGFRFHPTDAEIIVFYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATVSGYWKATGKDKEIYHKGKSNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFATHNLPKAEKDEWVVSRVFHKNTDVKKPQISGLLRINSIGHDDLLDYSSLPPLMDPSYTNDDFKGITNQQISSTKSQSDGYYLPSFSINNQQNQFVMKPEDNYHRIINYDNHHHHHHHEINPTMNNYTLNSNSNSNQTNLNNPIGNTLSQPQIRIQNPNLNYFMYQNRINQSSIPTTTFGNNNECKMEQFSSNQSQDTGLSNDTSSAVSKQDMGRNRTMYEDLEGPSSVAPLSDLESFWDY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1133 389 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 352 - -
Tpr6g1133 389 MobiDBLite consensus disorder prediction 337 362 - -
Tpr6g1133 389 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Tpr6g1133 389 ProSiteProfiles NAC domain profile. 17 169 IPR003441 GO:0003677|GO:0006355
Tpr6g1133 389 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Tpr6g1133 389 MobiDBLite consensus disorder prediction 337 361 - -
Tpr6g1133 389 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 352 - -
Tpr6g1133 389 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1133 Tpr-Chr6 11374741 11377145 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1133 1 206 NAC Transcription Factor Family AT5G18270 70.423 5.04e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr6g1133 NAM 4.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1133 - - aprc:113861501 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1133 6 11374741 11377145 Tpr6g1133 6 11374741 11377145 ECH