LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g1122	ATGATCAGTGCAATAAAAGCAGCAATTGGAGATGGAGTATTAACTTTCATGTGGGTCTTTTGTTCATCCTTGTTGGGTTTAGTTTCTAGTGCTATAACAAAATCACTTGATCTTCAAAATGTTTCATATAATGGTTTCCCTTACCCTTCTTTAATAATTACCACTACTCTTGTCTTTCTCCTTGTTCTTTTGTTTACCATAATTGGTAGTGCAATGGGTGGTGCTAGTTTTAATCCTACTGGTACTGTTGCCTTTTACTTCCTTGGTCATGGTTCTCATACACTCTTCTCAATGGCTCTCCGTTTCCCTGCTCAGGCGTTTGGTGCTGCGGGTGGTGCAATGGCAATTGCCGAGTTGATCAATCCGAAATATAGGCACATGATCAAGGGTCCTTCTTTGAAGGTGGACTTGCATACCGGGGCTGCTGCTGAATTGGTTTTGACATTTGTGATTACTTTTGCTGTTCTCTGCATATTCCTCAAGGGCCCTCGTAATGATTTATTGAAGCTTTGGTTGCTCGCCATGTCAACTGTCACTTTGGTAGTGCTTGGCTCTGCTTACACTGGTCCATCCATGAACCCAGCCAATGCCTTTGGTTGGGCATACGTAAACAACCTGCACAACACATGGGACCAATTCTACGTATACTGGATTTGTCCTTTCGCTGGAGCAATATTGGCTGCTTGGATATTTCGTGCTATCTTCCCCCCACCGGAAGTTAAACAGAAAAAGAGCACGAAGAAGCAAGAATGA	753	0.4303	MISAIKAAIGDGVLTFMWVFCSSLLGLVSSAITKSLDLQNVSYNGFPYPSLIITTTLVFLLVLLFTIIGSAMGGASFNPTGTVAFYFLGHGSHTLFSMALRFPAQAFGAAGGAMAIAELINPKYRHMIKGPSLKVDLHTGAAAELVLTFVITFAVLCIFLKGPRNDLLKLWLLAMSTVTLVVLGSAYTGPSMNPANAFGWAYVNNLHNTWDQFYVYWICPFAGAILAAWIFRAIFPPPEVKQKKSTKKQE*	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g1122	250	Pfam	Major intrinsic protein	3	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PANTHER	AQUAPORIN SIP1-1	3	244	-	-
	Tpr6g1122	250	Gene3D	Glycerol uptake facilitator protein.	2	248	IPR023271	-
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g1122	250	SUPERFAMILY	Aquaporin-like	4	239	IPR023271	-
	Tpr6g1122	250	PANTHER	AQUAPORIN SIP1-1	3	244	IPR044222	GO:0015250

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g1122	Tpr-Chr6	11225053	11229917	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g1122	1	235	Major Intrinsic Protein MIP	AT3G04090	55.319	1.05e-75	228

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g1122	K09875		-	gmx:100792787	382.104

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g1122	6	11225053	11229917	Tpr6g1122	6	11225053	11229917	ECH
	Tpr6g1122	6	11225053	11229917	Tpr5g0501	5	7478245	7483145	PCT