Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1103 ATGGCTGACGGTGAATCAGACAAGAACATTCAGATATGGAAGATAAAAAATTTGATCAAAGCACTGGAAGCTGCAAGAGGTAACGGTACTAGCATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGTAGGGTAAACCGACAATCTGTGCTTGGTGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTCCTTTATACTGGTACCATTCTCACTGATGACGGCAAGGAAAAGAAAGTGACAATTGATTTTGAACCTTTCAGACCAATCAATGTATCACTTTATCTCTGTGATAACAAATTTCATACAGAAGCTCTAAATGAACTTCTAGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACTCTTTTCGGAACTCTAAGTGGAAATACTCGTGAGGTGCTTCATAAATTTACTGTGGATCTACCAAAGAAACATGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGCATGGAAAAACGGCACAATTATGTTAGGAAGACTGCGGAACTTGCTACTCAGCATTTCATCAACCCTGCTACTAGTCAACCTAATGTTGCTGGACTTATACTTGCTGGTTCGGCTGACTTCAAGACTGAGCTGAGCCAGTCAGATATGTTTGATCCACGTTTGCAAGCAAAAATATTGAACGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCTATTGAATTATCTGCTGAGATTCTATCTAATGTGAAGTTCATACAAGAGAAACGCTTGATAGGAAAATATTTTGAAGAGATAAGTCAAGAAACCGGGAAATATGTTTATGGAGTTGATGACACATTGAAGACCCTTGAGATGGGTGCTGTTGAAACACTCATTGTATGGGAAAATTTGGATATAAATAGGTATGTACTGAAAAATGCTACCACGGGTGAGATTGTCATAAAGCATTTGAAGAAGGATCAAGAAGCTGATCAAAGCAACTTCCGCGATGCAGCTACCAATGCAGACTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCTAATGAGTACAAAAAATTTGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAGTTTTGCAGGGGGTTTGGTGGCATTGGAGGTATGCTTCGTTACCAGCTTGATATCAGATCATTTGATGAGTTATCTGATGATGATGGTGGAGTGTACGAGGATTCCGATTAA 1314 0.3995 MADGESDKNIQIWKIKNLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTDDGKEKKVTIDFEPFRPINVSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQHFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKTLEMGAVETLIVWENLDINRYVLKNATTGEIVIKHLKKDQEADQSNFRDAATNADLEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGGVYEDSD* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1103 437 Pfam eRF1 domain 1 24 137 IPR005140 -
Tpr6g1103 437 Gene3D eRF1 domain 1 1 134 IPR024049 -
Tpr6g1103 437 SUPERFAMILY L30e-like 277 419 IPR029064 -
Tpr6g1103 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 437 IPR004403 GO:0003747|GO:0006415
Tpr6g1103 437 Pfam eRF1 domain 3 280 417 IPR005142 -
Tpr6g1103 437 Pfam eRF1 domain 2 143 276 IPR005141 -
Tpr6g1103 437 SUPERFAMILY Translational machinery components 141 275 - -
Tpr6g1103 437 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 416 IPR004403 GO:0003747|GO:0006415
Tpr6g1103 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 139 IPR024049 -
Tpr6g1103 437 Gene3D - 278 437 IPR029064 -
Tpr6g1103 437 SMART eRF1_1_2 3 139 IPR005140 -
Tpr6g1103 437 Gene3D eRF1 domain 2 135 276 IPR042226 -
Tpr6g1103 437 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1103 Tpr-Chr6 10582731 10585858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1103 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 90.847 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1103 K03265 - egr:104419069 826.624