Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1087 ATGAGTTTTCAAGATATTCAACATGGCTCCAATCCTCCTTCTCGTCGAACTCAGTCACCGTCGCAAGCTGTTGCTGCCGGAATTTTCCAGATCAATACCGCCGTTGGTACTTTCCGACGACTCGTTGATTCTGTTGGAACCGTTAAAGACACTCCAGAGCATCGTCAAAAACTGCACAATACGAGGCAGAGGATATTGCAGCTTGTAAAGGATACTTCTGCTAAGCTCAAATCTTTGTCTGAATCTAATCGTGATGCTAATGCCAATGCTAATAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACTACATTGCAAGAATTCCAAAAAGTTCAACAGCTTGCTTCTGAGCGCGAAACAACTTACACTCCTGCTGCCTCAACTTCTTTACCAACAAGCTCTGGCCCTGGTGAAGAATCAATTGAGATAGACGCCGAAAGCCAACCTTTTATCAGAGGGCAGTTGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAAGCCATGATTGAAGAAAGAGATCAAGGTCTTAGAGAGATAGAAGAGCAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGACACTTCTGCTGGTGCAACATCTCAAGCTAAGGTCCAGCTAGTCAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATTGTGTTGGTGGGTGCTTTTAGTTTTTGTGGCGGTGCTGGTGATCTTCCTCATTATACTTCTTACTTAG 798 0.4123 MSFQDIQHGSNPPSRRTQSPSQAVAAGIFQINTAVGTFRRLVDSVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLSESNRDANANANKKIEDAKLARDFQTTLQEFQKVQQLASERETTYTPAASTSLPTSSGPGEESIEIDAESQPFIRGQLRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATSQAKVQLVKASKSVKSKNKLCWWVLLVFVAVLVIFLIILLT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1087 265 Coils Coil 69 89 - -
Tpr6g1087 265 SMART SynN_4 8 122 IPR006011 GO:0016020
Tpr6g1087 265 CDD SNARE_Qa 175 233 - -
Tpr6g1087 265 Gene3D - 9 130 - -
Tpr6g1087 265 Gene3D - 166 265 - -
Tpr6g1087 265 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Tpr6g1087 265 MobiDBLite consensus disorder prediction 117 144 - -
Tpr6g1087 265 PANTHER SYNTAXIN-22-LIKE 14 264 - -
Tpr6g1087 265 PANTHER SYNTAXIN 14 264 IPR045242 -
Tpr6g1087 265 SMART tSNARE_6 167 234 IPR000727 -
Tpr6g1087 265 SUPERFAMILY t-snare proteins 19 227 IPR010989 GO:0016020|GO:0016192
Tpr6g1087 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Tpr6g1087 265 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g1087 265 MobiDBLite consensus disorder prediction 117 138 - -
Tpr6g1087 265 Pfam SNARE domain 209 260 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1087 Tpr-Chr6 10395704 10398920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1087 1 252 SNARE and Associated Proteins AT5G46860 58.238 3.72e-97 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1087 - K08488 gmx:100787141 401.749