Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1074 ATGAGCCCTTTGAAAGGAAAGAAGAAACAAACGACAGGAACAACAAGCGAAACAACGACACAAGAACAACAAACGGCATGGGGAGGACGATACCTCGGAGTACGAAGAAGGCCATGGGGACGTTACGCGGCAGAGATTCGAGATCCTTCTACGAAAGAAAGACACTGGTTAGGAACATTCGACACTGCTGAAGAAGCTGCTTTAGCTTACGATAGAGCGGCACGTGGCATGCGTGGATCACGTGCCAGAACCAATTTTGTTTACGCTGATACTCCTCCAGGTTCTTCCGTTACTCCAATACTCTCCCCTGACCAACAACAACAACAACAACCTCAAACTTTTCATGATCTTTCTTTTGTTCTTCAACCCGACCCGGTTCCTTGTCTTGACCCGGTTTCAATCATAACTTCCTCCGTTAATTACGGTTACAATGAGGAAAATATTAATTATTTAAATAAATATAATCATTCTCCTCAAGTTCCTCTTCCTACATTGGAGGCTAGTATTAATAACGGAAATTCCTATTTTAACCTTGGTAGTAATAGTACTACTAGCAGTGTAGAGCTTCCTCCTTTGCCACCGGATATTACAAGCTCCACGTGTTATGATCAGGGTAACTATGGATTCAACGGTGGTGATCATGATCATGATCATGATAATGGGTATTATTATTCTTCATCATGGGAGCAGAATATGGATTGTTATAATAATAATCAAATGTTTGGTACAAATATGGGAGGTGCAGAGAGTAATAATACTACAACATTAGCAGGTTCTGTTAATGGTAGTACTTTTGATTTTGGGAGCTCGTCTTTTTTCTTCTGA 825 0.4085 MSPLKGKKKQTTGTTSETTTQEQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARGMRGSRARTNFVYADTPPGSSVTPILSPDQQQQQQPQTFHDLSFVLQPDPVPCLDPVSIITSSVNYGYNEENINYLNKYNHSPQVPLPTLEASINNGNSYFNLGSNSTTSSVELPPLPPDITSSTCYDQGNYGFNGGDHDHDHDNGYYYSSSWEQNMDCYNNNQMFGTNMGGAESNNTTTLAGSVNGSTFDFGSSSFFF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1074 274 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Tpr6g1074 274 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Tpr6g1074 274 MobiDBLite consensus disorder prediction 1 30 - -
Tpr6g1074 274 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Tpr6g1074 274 SUPERFAMILY DNA-binding domain 30 87 IPR016177 GO:0003677
Tpr6g1074 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 14 274 - -
Tpr6g1074 274 MobiDBLite consensus disorder prediction 1 27 - -
Tpr6g1074 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 274 - -
Tpr6g1074 274 CDD AP2 30 86 IPR001471 GO:0003700|GO:0006355
Tpr6g1074 274 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Tpr6g1074 274 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Tpr6g1074 274 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1074 Tpr-Chr6 10127671 10129081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1074 14 218 AP2-EREBP Transcription Factor Family AT5G13910 44.811 3.85e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr6g1074 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1074 K09286 - gmx:100792421 201.445