Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1044 ATGGTTGCGTCTTCGGAGATTCGCGATTCTGTTGCTAATGTTGACTGTGGTGGTGGTGGTGGTGTTGTTCCGAAGGTTTCCGGGAAGAATGAGGTTAGCTCAACGGTGAAGATAAAGGTGAAATTTAGTGGAAATAAAACCGATTCGACGGAAACTTTACCAATGCAGAATCGAAGATCGAGCTCGAGAATCCAAGCTCAGCTGAAAGAAGCTGAGGAGAAACAGCGTCGCCGGAGAGCTGAAGGTTTAGCTGATGAAGAAAAACCTGTTGAGGTTGAGACTCCGCCGAGGTCGAAAAAGCGCGTTAAGAAAAGTACCGGCGAGGTGACTGTTACGAAAAGTCCAGGCGAGGTGAGTGTGAGTAAGGAAGGTGTTTCCGAGAACAAGACGACGAAGAAGGATGAGGTTGTTTTGGAGAAAGAGACGAAGAAGAAGGAGAAGAAATCTGCATCGTGTGTGAAACGTGAGCTGATGGAAGTTCGTCATCAGAAGATAACGGCGGAGTCGGAAAATGCGGTTGCTGAAAACGCAGCTGGTGGTGCATTAGGTGAGAAGAGCTTAACTGCTAAGGTGAAGGAGACGATTAGGGTATTTAATAAACACTATCTTCATTTGGTTCAGGAGGAGGAAGAGAGGGTTGCTAAAGCGAAAGCAGAAGCTGAGAAAAAATGTGCTGGGAAGAAATCTGCTAAAAAATCTCCCAAGAAGAAATCTACTAAAAATTCTCCGGAGAAAAAATCTCCTAAAAAATCTCCTGAGAAGAAATCAGCTAAGAACAACACTGAACCTAAAGAAAAAAAACATGCAGCCAAGCGACCTGATCTGAAGGCCTTAACAAAGATGTTGAAGAATAACGAGATACTGTATCCTGAGAAGAGAATTGGCCATATTCCAGGTATTGAGGTTGGCTATCAGTTTTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAACGGTATTGATTATATGGGCCAAAGTTATACCAAAGTGTACAACGACTACCAATTCCCAATTGCTGTGGCCATTGTTTTGTCAGGCATGTATGAGGATGATCTTGATAATGCCGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACTGGTGATAAGCGTCAAATGCGAGATCAAAAATTGGAGCGGGGAAATTTAGCACTCAAGAACTGCTCGGAGCAGAGCGTACCAGTTAGGGTGATTCGAGGTCATGACTCTACTAGCAGTTACACTCGGAAAGTGTATACATATGATGGCCTGTACAAGGTTGTCAATTATTGGGCGGAGAAGGGAATATCGGGCTTCACTGTTTATAAGTTTCGGCTTAGGAGGATTGATGGACAGCCTACATTAACAACACAACAGGTTTATTTCACATGTGGGCGTGTACCTCAGACTGTAGCAGAAATAAGAGGGTTGGTATGTGAGGATATCACTGAAGGTCAGGAAGATGTGCCCATCCCAGTTACAAATTTGGTTGATGACTCCCCTGTTCCACCCATAGGTTTCAAATATTTAAAGTCTCTGAAGGTTGCAAAAAATGTTAAGATTCCTGCAAATGCCTCTGGGTGCAATTGCAAAGGCATGTGTATTGATCCAAGAACTTGTGAATGTGCAAAGCGCAATGGCTCTGAATTCCCCTATGTATCCAGGGATGGTGGCAGATTAATTGAAGCTAAAGATGTTGTGTTTGAATGTGGTCCCAATTGTGGTTGTGATCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTCGATATCGTCTTGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCTTGGGATTTTATACCTTCTGGTGCACCAATTTGTGAGTACACAGGAGTACTTGGTAGGGCAGATGATGTAGACAGTGTGTTGGAAAACAACTACATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGACTTGGTGTAAGAGAGAGGCGGTCACAAAATGTAGCATATGCTGCAAATCTGTTGGACAACTATGATGGCCAAGATTCTGAAGCACCAGAGTTTTGTATTGATGCGGGATCCACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTTATGCTGTTTGCTGCTGACAACATTCCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCCCTTGACAGTGTCTTGGACTCTGATGGGAAGGTAAAGCAAATGGCATGCTATTGTGGAGCTTCCGGCTGCAGGAAGCGGATGTTCTAA 2310 0.4372 MVASSEIRDSVANVDCGGGGGVVPKVSGKNEVSSTVKIKVKFSGNKTDSTETLPMQNRRSSSRIQAQLKEAEEKQRRRRAEGLADEEKPVEVETPPRSKKRVKKSTGEVTVTKSPGEVSVSKEGVSENKTTKKDEVVLEKETKKKEKKSASCVKRELMEVRHQKITAESENAVAENAAGGALGEKSLTAKVKETIRVFNKHYLHLVQEEEERVAKAKAEAEKKCAGKKSAKKSPKKKSTKNSPEKKSPKKSPEKKSAKNNTEPKEKKHAAKRPDLKALTKMLKNNEILYPEKRIGHIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYTKVYNDYQFPIAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQMRDQKLERGNLALKNCSEQSVPVRVIRGHDSTSSYTRKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRIDGQPTLTTQQVYFTCGRVPQTVAEIRGLVCEDITEGQEDVPIPVTNLVDDSPVPPIGFKYLKSLKVAKNVKIPANASGCNCKGMCIDPRTCECAKRNGSEFPYVSRDGGRLIEAKDVVFECGPNCGCDPGCVNRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPSGAPICEYTGVLGRADDVDSVLENNYIFEIDCLQTIKGLGVRERRSQNVAYAANLLDNYDGQDSEAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSDGKVKQMACYCGASGCRKRMF* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1044 769 Coils Coil 61 81 - -
Tpr6g1044 769 ProSiteProfiles SET domain profile. 591 739 IPR001214 GO:0005515
Tpr6g1044 769 Gene3D SET domain 472 769 IPR046341 -
Tpr6g1044 769 SMART set_7 591 745 IPR001214 GO:0005515
Tpr6g1044 769 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 57 768 - -
Tpr6g1044 769 Pfam Pre-SET motif 482 583 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g1044 769 MobiDBLite consensus disorder prediction 65 107 - -
Tpr6g1044 769 MobiDBLite consensus disorder prediction 28 64 - -
Tpr6g1044 769 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 768 - -
Tpr6g1044 769 ProSiteProfiles Post-SET domain profile. 753 769 IPR003616 -
Tpr6g1044 769 Pfam SAD/SRA domain 294 452 IPR003105 -
Tpr6g1044 769 MobiDBLite consensus disorder prediction 240 273 - -
Tpr6g1044 769 Coils Coil 199 223 - -
Tpr6g1044 769 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 92 769 IPR025794 GO:0016571
Tpr6g1044 769 SUPERFAMILY PUA domain-like 277 467 IPR015947 -
Tpr6g1044 769 MobiDBLite consensus disorder prediction 1 134 - -
Tpr6g1044 769 Gene3D - 278 464 IPR036987 -
Tpr6g1044 769 SUPERFAMILY SET domain 475 745 IPR046341 -
Tpr6g1044 769 Pfam SET domain 602 739 IPR001214 GO:0005515
Tpr6g1044 769 SMART G9a_1 290 452 IPR003105 -
Tpr6g1044 769 MobiDBLite consensus disorder prediction 108 125 - -
Tpr6g1044 769 ProSiteProfiles YDG domain profile. 295 448 IPR003105 -
Tpr6g1044 769 SMART preset_2 479 575 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g1044 769 ProSiteProfiles Pre-SET domain profile. 526 588 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr6g1044 769 MobiDBLite consensus disorder prediction 220 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1044 Tpr-Chr6 9761046 9771274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1044 281 769 EF-hand Containing Proteins AT5G13960 66.939 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr6g1044 SAD_SRA 2.6e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1044 K11420 - gmx:100795584 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1044 6 9761046 9771274 Tpr6g1044 6 9761046 9771274 ECH