Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1040 ATGTCCATCTTGCCCTCACAAACCCAAGCTACATCTTCATCTTCTTCGATTACCCCAATCCCTAACCCTAATTTACAACATGGAATTTCAGATACTACCTCTTCTTTTTCCCCAAAACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATTATCCAGGTCCATCAACTCCAGCTGCAGACGATTCTGGCGGACCTTCCGAAAAGGTGACGGAATTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGCGAAACTCTAGAACACATTCTAGGAGTCACTCAGGAAGACGGACAGTTGGATCGCCCCAGTCTGAGGGGAAGCCAACAGTAACAGTTTCTTCTCATAGAAATCAACAGACTACCGGGTCTGTATATTCTCAAGGAAGCACCCCTTTGGCAGGGAGGAAATCTCAGATGGTGAATGGCAATCACTTGCTCAATTTTCAGTATGATCCAATATCACGTTCTCAACAAAGGGGTACTCCCGCTCCCCCTCCAGCAAGAAGGCAGAGGAAGAGAAGACCGTACAATAAAGATCTGTTTTTGCAGGCAAATTTCAAATTCATGGTGCTAGATTCAGGAAACTATTCACCTGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACTCCTTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGGCACATTTTCTGTTTCCCATGTATACTACAATACTTGTTGTTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCGTTGTGCTTTGTGATGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCAGTTTCTTAACAAGGAAGAAGGATTCGTTTACTCTTTCGCATAAAAATAAACAAGAGACTGATAACTCATCATGTAGCCAACGAGATGTATATGACCCCTTTTCTAAGTTCACACTCACGTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGACGACCTGGAGAAGCTTCCATATGTTAGTGCTGCAATGCAACAATTAAAACAGAGAAAGAAGTATTGGTATGAGCACAAGGCTTGTGACAATGAAAAATCTTCTAACATCATTGATTATACACACCAGATACCATCAATATCTGCAAATGCTGTGGATACTGATGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTGCCCTGATCAAAGTAAGGTTGTAATGCTGGATAAGTCAGCCGCTGGAGCCTGTCAGGATGAAACTTTGGATGTGGACAAGGTACTAGTAGAGCAGGAACTGAATATGGCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGAGCATTCAAATGGCATTGGAGATGCAAAGGAAAATGATTCGTACAATTTCTATCAGGCTGCTGATGGTCAACATATAATTCTTCATCCTTTGAACACGAAGTGTTTACTGCACCATTATGGTAGCTATGATAAGCTTCCTCACAGAATAAGTGGAAGGATTCTACAATTGGAGACAGTTACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCGCTAACCACAATATTTCAGCTTTGTGAAGTTGATTTGAGCGAGATGTTACCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAATCGTGCAAACCAGAGGAAGCAACTTGCAAAGAAGGAACAGAAGGAAAAATTAAAGGCTGAAGCTGCTTCTAATTATGCTCTTTCCATGTCAACCCATTCTCAGTTTATTTCTCGCGATGATCCTCCCACATTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTTTGTCATCAAGTCCCCCAGTTGTTGGTGAGAAGAAATTGTTCTCAAGTGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTTCAAACTCAAGAAACTAACAATCTACATAATCGCAATTCATTTGCTGATTCTTCTGGTACAGCAGGTTTGAGGAATGGGGAGGCACTATCATACTCCAACATCATATCTAGAGCAGAATCTAATGGAAGTTTGAATGCACCTAAGACAAATGATTTGGGAAAGAAGGGAAAGAAACCAAGTCGAGTTCTTTTGTCAACAGCTGGTGGCAGGCGTTATTGA 2244 0.4184 MSILPSQTQATSSSSSITPIPNPNLQHGISDTTSSFSPKLHHALGSLQISDYPGPSTPAADDSGGPSEKVTELESSSGMKAPQRNSRTHSRSHSGRRTVGSPQSEGKPTVTVSSHRNQQTTGSVYSQGSTPLAGRKSQMVNGNHLLNFQYDPISRSQQRGTPAPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISVKDLYTLHITNVKQYQVGDNIEFSFLTRKKDSFTLSHKNKQETDNSSCSQRDVYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSAAMQQLKQRKKYWYEHKACDNEKSSNIIDYTHQIPSISANAVDTDDESCSNGSRTSSTDCPDQSKVVMLDKSAAGACQDETLDVDKVLVEQELNMASSYEEKNCIQEHSNGIGDAKENDSYNFYQAADGQHIILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTIFQLCEVDLSEMLPPEALAPFMDEIKNRANQRKQLAKKEQKEKLKAEAASNYALSMSTHSQFISRDDPPTFSMDDFEALGNSALSSSPPVVGEKKLFSSVTRLGFAAGHDSPSFQTQETNNLHNRNSFADSSGTAGLRNGEALSYSNIISRAESNGSLNAPKTNDLGKKGKKPSRVLLSTAGGRRY* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1040 747 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Tpr6g1040 747 SMART ring_2 225 271 IPR001841 -
Tpr6g1040 747 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Tpr6g1040 747 PANTHER RING FINGER 10 FAMILY MEMBER 81 743 IPR039739 -
Tpr6g1040 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 331 IPR013083 -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 416 436 - -
Tpr6g1040 747 CDD RING-HC_RNF10 225 272 - -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 1 41 - -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 1 132 - -
Tpr6g1040 747 SUPERFAMILY RING/U-box 224 278 - -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 69 85 - -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 714 747 - -
Tpr6g1040 747 Coils Coil 583 603 - -
Tpr6g1040 747 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 150 174 - -
Tpr6g1040 747 MobiDBLite consensus disorder prediction 95 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1040 134 681 C3H Transcription Factor Family AT3G26730 57.270 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1040 - - gmx:100798764 1096.26