Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1035 ATGAATCGTGTTAGGGGTTTGAATGCTTCTGCTGGTTTCATGCTACCTGGCTCCATGCTTGACAGTATTTTTGTTGTTGATTCCTTTGTCGGTGCCGCGGGTAGTCGTCGTCGCAACAACAACAACAACAGGAGGCTCTCTTCACCACCAACAGCAACAACAACAAGGGACATAGGAGGAGTCAATCATCGTCCACATGTTCCTCCTCCTTCCTTCAACGTTCTTAATGGAACAATGGCAGATGATTTTGTTATTGTCTTTGATACTTATGTTGGTCGCAACAATGCGCTGCTGCATACAACACCTTTTCCTCCTCATCCCATCAATGTTACAACAAAATTAGATAACGATTCAGAAGCAACATGTTCCATATGTCTTTGCGAGCTCTCTAACGATTCATCGGCTGTTCAGATTAGTTGTTCGCATGTTTTTCACAGAGATTGTATCGAAAAGTGGATCACCGTGAAAAGGACATGTCCTCTCTGTAGAATAATTGTTTAG 501 0.4291 MNRVRGLNASAGFMLPGSMLDSIFVVDSFVGAAGSRRRNNNNNRRLSSPPTATTTRDIGGVNHRPHVPPPSFNVLNGTMADDFVIVFDTYVGRNNALLHTTPFPPHPINVTTKLDNDSEATCSICLCELSNDSSAVQISCSHVFHRDCIEKWITVKRTCPLCRIIV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1035 166 SUPERFAMILY RING/U-box 108 166 - -
Tpr6g1035 166 MobiDBLite consensus disorder prediction 36 58 - -
Tpr6g1035 166 PANTHER TARGET OF ERK KINASE MPK-1 109 164 - -
Tpr6g1035 166 MobiDBLite consensus disorder prediction 36 63 - -
Tpr6g1035 166 SMART ringv_2 121 163 IPR011016 GO:0008270
Tpr6g1035 166 Pfam Ring finger domain 121 163 IPR001841 -
Tpr6g1035 166 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Tpr6g1035 166 SMART ring_2 122 162 IPR001841 -
Tpr6g1035 166 PANTHER GB|AAF27103.1 109 164 - -
Tpr6g1035 166 CDD RING-H2_PA-TM-RING 121 163 - -
Tpr6g1035 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 165 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1035 Tpr-Chr6 9691161 9692008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1035 113 163 C3H Transcription Factor Family AT1G80400 43.137 7.86e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1035 - K10635 pop:18097656 65.855