Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1032 ATGAATCGTGTTAGGGGTTTGAATGCTTCTGCTGGTTTCATGCTACCTGGCTCCATGCTTGACAGTATTTTTGTTGTTGATTCCTTTGTCGGTGCCGCTGGTAGTCGTCGTGGCAACAACAACAACAACAGGAGGCTCTCTTCACCACCAACAGCAACAACAACAAGGGACATAGGAGGAGTCAATCATCGTCCACATGTTCCTCCTCCTTCCTTCAACGTTCTTAATGGAACAATGGCAGATGATTTTGTTATTGTCTTTGATACTTATGTTGGTCGCAACAACGCGCTGCTGCATACAACACCTTTTCCTCCTCATCCCATCAATGTTACAACAAAATTAGACAACGATTCAGAAGCGACATGTTCCATATGTCTTTGCGAGCTCTCTAACGATTCATCGGCAGTTCAGATTAGTTGTTCGCATGTTTTTCACAGAGATTGTATCGAAAAGTGGATCACCGTGAAAAGGACATGTCCTCTCTGTAGAATAATTGTTAGTTAG 504 0.4325 MNRVRGLNASAGFMLPGSMLDSIFVVDSFVGAAGSRRGNNNNNRRLSSPPTATTTRDIGGVNHRPHVPPPSFNVLNGTMADDFVIVFDTYVGRNNALLHTTPFPPHPINVTTKLDNDSEATCSICLCELSNDSSAVQISCSHVFHRDCIEKWITVKRTCPLCRIIVS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1032 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 166 IPR013083 -
Tpr6g1032 167 MobiDBLite consensus disorder prediction 36 58 - -
Tpr6g1032 167 PANTHER GB|AAF27103.1 115 164 - -
Tpr6g1032 167 SUPERFAMILY RING/U-box 108 166 - -
Tpr6g1032 167 SMART ringv_2 121 163 IPR011016 GO:0008270
Tpr6g1032 167 Pfam Ring finger domain 121 163 IPR001841 -
Tpr6g1032 167 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Tpr6g1032 167 SMART ring_2 122 162 IPR001841 -
Tpr6g1032 167 PANTHER TARGET OF ERK KINASE MPK-1 115 164 - -
Tpr6g1032 167 CDD RING-H2_PA-TM-RING 121 163 - -
Tpr6g1032 167 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1032 Tpr-Chr6 9521323 9522142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1032 113 163 C3H Transcription Factor Family AT1G80400 43.137 7.54e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1032 - K10635 pop:18097656 65.855