Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1030 ATGGATAGATACACGCTACCCTTACCAACACCACCACCACAAGGTGGAGTTCACAATACTCTCACTATACCTTCTTGGTCCGAACCTCAACAACAAGAATCACCATCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACACCAACAACACCGAACAAGACAACATTGCCATTGCTATTGCTATGGGTGCTAGTGCTACCTCTCTTCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACTTCTACAACAACAACAACAACAACAACGTTGTTAATGTTATTAATAATGTTCCATTTGTTTCAAATCCAACAACAATAACTGATAATTTTCTCATGCACCAAAACACAAACACCTTAGATTCAAATCCACACTCTTTCTTCCATAACAACAACAACTACTTTTTCAACAACAATAACAATAACAACAATAACCCATTTGAAATGGGTTTTGAAAATGGATTCTTTATGGGAAACAACATCACTTCAAATTCCCCTGTTTTCATGGGTGGTTCACTTGAACTGAGTTCAGCTTCCGAGTTTCCACCGAGTCTTGAACTCGATGCTTCAGTAACACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAACTGTCTCAACCTCAACCTCAACCACAACAACAACAACCCACGACTCTCTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTAGAGACTGTTGGGAACAAGAAGAAGAGAAAAGTGGAGAAGAAATGGGAAGAAGAAGGAAGTGGTGGTGGTGATGTTGATGGTGATATTGATGATTTTTCTGGGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAACAATTCTAATGGGACTGTTGTTACTGGTGGAGATCAAAAGGGGAAGAAGAAGAAAGGGCTTCCTGCGAAAAATCTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGAGCTTCAATACTCGGGGATGCAGTTGACTACTTGAAGGAGCTACTGCAGCGGATCAATAATCTTCACAATGAACTCGAATCAACTCCTCCTGGTTCATTGTTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCTACTCCGCCGACCCTTCCATGTCGAGTCAAGGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCAAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTGAACATTCATATGTTTTGTACCCGCAGACCAGGACTTTTGCTTTCAACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATTAGTTGTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCCGAGCAACAATGCAGAGAAGGCCAAGATGTCCTCCCGGAGCAAATTAAAGCAGTGTTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA 1485 0.4316 MDRYTLPLPTPPPQGGVHNTLTIPSWSEPQQQESPSSWSTPNSEPKHNTNNTEQDNIAIAIAMGASATSLPFFKPEPQPEPDNFYNNNNNNNVVNVINNVPFVSNPTTITDNFLMHQNTNTLDSNPHSFFHNNNNYFFNNNNNNNNNPFEMGFENGFFMGNNITSNSPVFMGGSLELSSASEFPPSLELDASVTPFSASFSMPLELSQPQPQPQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKKWEEEGSGGGDVDGDIDDFSGLNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYHGLN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1030 494 Coils Coil 343 363 - -
Tpr6g1030 494 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 77 493 - -
Tpr6g1030 494 MobiDBLite consensus disorder prediction 239 261 - -
Tpr6g1030 494 Pfam Helix-loop-helix DNA-binding domain 307 349 IPR011598 GO:0046983
Tpr6g1030 494 MobiDBLite consensus disorder prediction 1 48 - -
Tpr6g1030 494 MobiDBLite consensus disorder prediction 274 302 - -
Tpr6g1030 494 MobiDBLite consensus disorder prediction 15 48 - -
Tpr6g1030 494 CDD ACT_UUR-ACR-like 422 483 - -
Tpr6g1030 494 MobiDBLite consensus disorder prediction 274 290 - -
Tpr6g1030 494 SMART finulus 306 355 IPR011598 GO:0046983
Tpr6g1030 494 MobiDBLite consensus disorder prediction 239 255 - -
Tpr6g1030 494 Gene3D - 292 363 IPR036638 GO:0046983
Tpr6g1030 494 CDD bHLH_AtAMS_like 303 367 - -
Tpr6g1030 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Tpr6g1030 494 PANTHER BHLH TRANSCRIPTIONAL FACTOR 77 493 - -
Tpr6g1030 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 369 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1030 Tpr-Chr6 9505922 9509195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1030 76 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.430 3.22e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr6g1030 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1030 - - mtr:MTR_7g083900 659.062