Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1011 ATGATGATGGATGAGGGAGAAGGAAAGAAGAAAGTGGTGGTGAAAACCGAGGCGTGTGATATGATGGCAGGTGTTGAAGATGATGAAGTTGGATTTGTCAACGTGAAAGGAGACAATAACAACAACAACAACAACAACAAGAAGAACAAGAAGATGATGATGATTAATGGGTCGGGTCAACGGATCCGAAATGATTATGGTTTTGTTACTGCTGCATTTGGAACTGTTCAAAGGAAGAAAAGGATGGCTAGACAAAGAAGATCTTCATCTTCTACAATTACCATTCATCTCAAGAATCTTCCTTCTACTGCTTCTACTACTACTACTACTACTACCAGCTCGCACGTGCCAATTTCAACAATTCCTCCTCTTTTTCGCTATCTCCCTCCCGAAATTGATCATAGGAGGTTGAGATTCCTTTTCCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCAGCAGAGGCTTTCCTTCCTGCCCTCGAGTCGAAGGAAGGAATTCTTATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAATAGTCGGATGTATGTACTTGAAAACACCGGAGACTTTGTTAGCACACACGGTCTACGATTTGGAGATTCCATCATGGTTTACCAAGATAATCAAACTCACAATTATGTAATTCAAGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGGAACTAGTGATACAATGAATGACATCTTCATTGATGATTATGAGGTGAACCAGAGTTGCTTTGATGTAGCTTATCCTACAATGAATGATACAACAAGCATGTCATTTATATATGACACAACAATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACAAATTACTCAAGGATTGGATCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTGA 990 0.3919 MMMDEGEGKKKVVVKTEACDMMAGVEDDEVGFVNVKGDNNNNNNNNKKNKKMMMINGSGQRIRNDYGFVTAAFGTVQRKKRMARQRRSSSSTITIHLKNLPSTASTTTTTTTSSHVPISTIPPLFRYLPPEIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALESKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQTHNYVIQAKKACDQDEYMEGTSDTMNDIFIDDYEVNQSCFDVAYPTMNDTTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1011 329 MobiDBLite consensus disorder prediction 81 115 - -
Tpr6g1011 329 SUPERFAMILY DNA-binding pseudobarrel domain 139 243 IPR015300 -
Tpr6g1011 329 CDD B3_DNA 139 241 IPR003340 GO:0003677
Tpr6g1011 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 329 IPR044800 GO:0003700
Tpr6g1011 329 SMART B3_2 141 243 IPR003340 GO:0003677
Tpr6g1011 329 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Tpr6g1011 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 38 329 - -
Tpr6g1011 329 MobiDBLite consensus disorder prediction 87 115 - -
Tpr6g1011 329 Gene3D - 137 254 IPR015300 -
Tpr6g1011 329 Pfam B3 DNA binding domain 141 237 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1011 Tpr-Chr6 9323313 9327203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1011 56 329 B3 DNA Binding Superfamily AT3G26790 49.045 5.91e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g1011 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1011 - - gmx:100813055 397.127