Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1002 ATGTCGTTTCCGTGCGACTACTGCGACACAAGAAACGCGGTGCTATACTGCAAACCAGATTCGGCGAAACTCTGCTTAGTTTGCGATCAGCACGTGCACTCGGCGAACGCGCTCGCACTTAAGCACGTGCGCTACCAGATTTGTCAAAACTGCAAAAACGACGCCGCTTCGGTTCGTTGTTTTACTGAAAATTTAGTTCAATGTCACCGCTGCGATTGGGACGCTCACGGCGGCGGCGATTCCTCTTCCTCTTCTTCTTCTCACCACCACCACAACCTCCGCCGTCTCGACGGACTCACCGGATGTCCTTCCGTTCACGAGATCGTGTCTGCTTTGGGACTTGATTTGAAGCCGAACGATGCAGTTTTTGTTGCGGAGTTTGAAGGTCCTGTTGTTCCTGTTGTTCAGAATAGGGATGAGGTGTATGAACAGGTTGTGGAAGTTGCGAAGAGAAAGAGGGATTTGAATTGGTCAGTGTGTGGGGAAGTTGAAAATGAGTTCAGATTCAATGATTGTAGTAATGAAGTTGATGATTTTTTGTTGCTTCAGCAAACTCCGTTTACTTCTTTGCTCAATTTTTCATCTGAATTTGATGTCGGTGCTAAGAAAAATCATAATAATGATTATGGAAATGATGCTGAGGTTCTTCTCTGGAATCGTAATCCAACGTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATTCAATGGTGTAGAAGATGCTTCGTTATCGATTCCAAAATCATTGCAAGATGTGCATAATATGAATTGCTCAACACTTGGTGATGATGTTCTATCAAGAAATAATCAATCGGATCAGTCATCATCGAGCCAGGTGAAGAAGAAAGTAGAAAGCAACAAGAAAACTAGAGATGAGTTATCATCTGAGTCCAGATTGATTGAATCAATAACTTACAGTGGCGCCGATAAGGTACCAGTTATGGACCATCTTTTGAGTGGGAGTGAATATGTTAGCAACATAAATGCCAAGGTTGGCTTGGAAGAGCAAGCAAGGAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACTCGAAGGTTCGACAAGCACATTCGCTATGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGCGATTTGTTAAGGCAAGTAATACAAGTGATAATCAAGAATGA 1194 0.4355 MSFPCDYCDTRNAVLYCKPDSAKLCLVCDQHVHSANALALKHVRYQICQNCKNDAASVRCFTENLVQCHRCDWDAHGGGDSSSSSSSHHHHNLRRLDGLTGCPSVHEIVSALGLDLKPNDAVFVAEFEGPVVPVVQNRDEVYEQVVEVAKRKRDLNWSVCGEVENEFRFNDCSNEVDDFLLLQQTPFTSLLNFSSEFDVGAKKNHNNDYGNDAEVLLWNRNPTYQPPQVWDFQLQKSRDMTFNGVEDASLSIPKSLQDVHNMNCSTLGDDVLSRNNQSDQSSSSQVKKKVESNKKTRDELSSESRLIESITYSGADKVPVMDHLLSGSEYVSNINAKVGLEEQARNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKASNTSDNQE* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1002 397 CDD Bbox1_BBX-like 4 47 - -
Tpr6g1002 397 Pfam CCT motif 347 389 IPR010402 GO:0005515
Tpr6g1002 397 MobiDBLite consensus disorder prediction 274 303 - -
Tpr6g1002 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 393 - -
Tpr6g1002 397 SMART bboxneu5 4 47 IPR000315 GO:0008270
Tpr6g1002 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr6g1002 397 MobiDBLite consensus disorder prediction 288 303 - -
Tpr6g1002 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 3 393 - -
Tpr6g1002 397 MobiDBLite consensus disorder prediction 372 397 - -
Tpr6g1002 397 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1002 Tpr-Chr6 9196953 9201893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1002 5 391 C2C2-CO-like Transcription Factor Family AT2G33500 36.156 1.27e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr6g1002 CCT 2.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1002 - - aprc:113862926 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1002 6 9196953 9201893 Tpr6g1002 6 9196953 9201893 ECH