Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1001 ATGGGTCGTTGCCCTTGTTTTGGGTCTAGAAAGAAAGGGAAAGGGAAGAACCTTAATGATCAAGAAGAAGAAAAAAACAACCTTAAATCTGTTGAAACTCCCTCTTCTAGAAGATCTGTAGAACAGAAACCAGAGTTGCTTAAAGAAAACACAGAACAGAAACCAGAAGCCATACCGACGGTGAATACCGACAATTCTGATAAGGCTCGGACATTTACCTTCAGAGAGCTCGCGACAGCAACAAAAAATTTTAGGGATGAAACCTGTATTGGTCAAGGTGGATTTGGAACTGTTTACAAAGGAAAGATAGATGGCATTAGTCAGGTTGTAGCTGTTAAAAGACTTGATACAACCGGTGTCCAAGGAGAGAAAGAATTTCTAGTGGAGGTTCTCATGCTTTCTCTTCTACACCATCCTAACCTTGTTAGTATGATTGGTTACTGCGCCGAAGGAGATCAACGACTTCTCGTATATGAATACATGCCAATGGGATCTTTAGAATCTCATCTCCATGATCTTTCACCGGATAAAGAACCGCTAGATTGGAATAAGAGAATGTTGATAGCGGCTGGGGCAGCAAGAGGAATAAATTATCTGCACCATGAAGCAAAGCCTACTGTTATATACAGAGATGTGAAAACATCTAATATACTATTGGATGAAGGATTCCATCCAAAGCTTTCTGATTTCGGGCTTGCGAAATTCGGTCCGACTGGAGACCAATCATATGTTGCTACTAGAGTAATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGATATATATAGTTTTGGAGTTGTGTTATTGGAGCTAATTACCGGACGTAGAGCTTATGACGATACTCTTGAGCATGACAAGCATCTTGTTGATTGGGCACGCCCAATGTTCAGAGACAGAAGGAGTTATCCAAAATTAGTAGATCATCGTTTGCAAGGTCACTACCCTATATCTGGTCTAAGGATGGCCGTTGAAATGGCAAGCATGTGTCTTCGAGAAGAGCCACGTTATCGGCCTGATGCAGGCGATATAGTACTAGCCCTAGATTACTTGTCATCCAAGCAATATGTTCCAAAAGGATCTGGAGCAGTTAGCCCGGGATCAATGGATATCGACGACTCCCCAAAAGAAGCATCTATGATTTTGCCTAAAGACTTGCTAAGAGAGCAAGCTGTCGCAGAGGCTAAACAGTGGGGTGAGACATGGAGAGAAAAGAGAAGACAAAGTGGCCAAACTAGTCCTGAGGGATTAAGAGGGTAA 1287 0.4211 MGRCPCFGSRKKGKGKNLNDQEEEKNNLKSVETPSSRRSVEQKPELLKENTEQKPEAIPTVNTDNSDKARTFTFRELATATKNFRDETCIGQGGFGTVYKGKIDGISQVVAVKRLDTTGVQGEKEFLVEVLMLSLLHHPNLVSMIGYCAEGDQRLLVYEYMPMGSLESHLHDLSPDKEPLDWNKRMLIAAGAARGINYLHHEAKPTVIYRDVKTSNILLDEGFHPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELITGRRAYDDTLEHDKHLVDWARPMFRDRRSYPKLVDHRLQGHYPISGLRMAVEMASMCLREEPRYRPDAGDIVLALDYLSSKQYVPKGSGAVSPGSMDIDDSPKEASMILPKDLLREQAVAEAKQWGETWREKRRQSGQTSPEGLRG* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1001 428 MobiDBLite consensus disorder prediction 13 52 - -
Tpr6g1001 428 Gene3D Transferase(Phosphotransferase) domain 1 161 370 - -
Tpr6g1001 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Tpr6g1001 428 PANTHER OS07G0668900 PROTEIN 5 374 - -
Tpr6g1001 428 MobiDBLite consensus disorder prediction 406 428 - -
Tpr6g1001 428 PANTHER OS07G0668900 PROTEIN 5 374 - -
Tpr6g1001 428 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Tpr6g1001 428 CDD STKc_IRAK 90 354 - -
Tpr6g1001 428 MobiDBLite consensus disorder prediction 1 65 - -
Tpr6g1001 428 SUPERFAMILY Protein kinase-like (PK-like) 67 357 IPR011009 -
Tpr6g1001 428 Gene3D Phosphorylase Kinase; domain 1 45 160 - -
Tpr6g1001 428 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1001 428 SMART serkin_6 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g1001 428 Pfam Protein kinase domain 85 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1001 Tpr-Chr6 9188532 9193262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1001 48 417 Glycoside Hydrolase AT3G07070 54.404 6.20e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tpr6g1001 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1001 K13430 - gmx:100809298 591.267