LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0996	ATGGCTATAGATAAATATGTTGCCTATGATTTGGACGGTTGCCCCAAGTTACCTGTTGGATTCAGGTTTGATCCAATAGATGACATTCTTGTGAACTTTTACCTGAAGTTGAAGGTTTATAATCAACCTCTTCCATTTCATGCCATTCAAGAATTTGATGTCTTTCAAACCGAACCTTGGATGCTTCCATATGATAGGAATTCTTTCAAAGATAGGAAATATTATTTCTTTGATATTAGGAACCGTAGGTTCCAAAACATGGATACGAGAGTCGCCGGAAATGGTGAATGGAGAACGGTGGAAAAGAACAAGGAACTTGTTCTCCCAAGCAACTACTTCATTGGTAGAAAAAACACCCTTGTATATTGGAGAATACAAGGAAATGAAGTTGTTAAGACACAATGGGTGATGCATGAATTTCGCATTGGTACAATTTTTCATCCAATAAAGGTGACAACTTTAGGTGCCTATCGCATTTTTAAGATGAAGGTTGCAAAGGTTGAGAAGAAGGTGAACATACCAACTATGATTGATTTTACAATGGAGGATGCAAGTTCTTCTGCCCCTCCTCCTTCTCCATGA	582	0.3814	MAIDKYVAYDLDGCPKLPVGFRFDPIDDILVNFYLKLKVYNQPLPFHAIQEFDVFQTEPWMLPYDRNSFKDRKYYFFDIRNRRFQNMDTRVAGNGEWRTVEKNKELVLPSNYFIGRKNTLVYWRIQGNEVVKTQWVMHEFRIGTIFHPIKVTTLGAYRIFKMKVAKVEKKVNIPTMIDFTMEDASSSAPPPSP*	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0996	193	Pfam	No apical meristem (NAM) protein	18	142	IPR003441	GO:0003677\|GO:0006355
	Tpr6g0996	193	PANTHER	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	17	164	-	-
	Tpr6g0996	193	Gene3D	NAC domain	27	172	IPR036093	GO:0003677\|GO:0006355
	Tpr6g0996	193	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	17	164	-	-
	Tpr6g0996	193	ProSiteProfiles	NAC domain profile.	17	162	IPR003441	GO:0003677\|GO:0006355
	Tpr6g0996	193	SUPERFAMILY	NAC domain	14	147	IPR036093	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0996	Tpr-Chr6	9128788	9130185	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0996	17	153	NAC Transcription Factor Family	AT3G04070	34.266	9.18e-26	99.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Tpr6g0996		NAM	4.4e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0996	-		-	cam:101501671	247.669