Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0990 ATGGCAGATGATTCTTCATCCATTTATGAGTATTTTAAGCAGCAGCAACAACAACAACAACTGCAACAACAGCAACCATCTTCATCAACAAGAAGTGGTGGAAGAAGATCTTCATCTTCAACAGCAAAAACTTTTCAATGTCTTTTTTGTTATAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCATCAAAATGCTCATAAGCTTGAAAGAGCTGCTGCAAAAACAAGAACCATTAACCTTAACAACTACACCACCACCACCACCAACAACAACAACAACAACGTTGGTACTGTCTCTTTCTCTTCACCACAACCACAACAGTCACCACCTTCATTTTCTTTCATGAATGAACCAGAAAACTTAACTACTATGTCTCATCAACAACTTGAACCGTTTCATCCTCAATATGAATACCCTTATTGGCAAAACCTTGAAATGGAACAGTTTCATCAAACTCAACATCCTCAGTTTCATCAAAATCAACAGTACCATGTTACAACAAACACTTTTCCTATGGATCCTTTCAATGGTTCTTCTTCTGCTTCATACTACACTCATCCTGATGAGCAACATGTTTTCTACAACAATGCTACTGATGATGTTGCTGCTGCTGGTTCTCCATCTCATGATGCTTCTGAAAATGTGAATCTTGACCTCACACTTCACTTGTGA 675 0.3822 MADDSSSIYEYFKQQQQQQQLQQQQPSSSTRSGGRRSSSSTAKTFQCLFCYRKFYTSQALGGHQNAHKLERAAAKTRTINLNNYTTTTTNNNNNNVGTVSFSSPQPQQSPPSFSFMNEPENLTTMSHQQLEPFHPQYEYPYWQNLEMEQFHQTQHPQFHQNQQYHVTTNTFPMDPFNGSSSASYYTHPDEQHVFYNNATDDVAAAGSPSHDASENVNLDLTLHL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0990 224 PANTHER ZINC FINGER PROTEIN JAGGED 21 224 IPR045320 GO:0003700
Tpr6g0990 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Tpr6g0990 224 PANTHER ZINC FINGER PROTEIN KNUCKLES 21 224 - -
Tpr6g0990 224 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Tpr6g0990 224 MobiDBLite consensus disorder prediction 1 39 - -
Tpr6g0990 224 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Tpr6g0990 224 Gene3D Classic Zinc Finger 32 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0990 Tpr-Chr6 8996892 8997566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0990 43 141 C2H2 Transcription Factor Family AT5G14010 45.714 2.21e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0990 - - mtr:MTR_7g083210 117.472