Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0981 ATGGATGAATACCAAATTGATGCATACCCAAATTTTTCACCAGTTGATTTTGACACAAAAAATATTTCATCATGTCCCAATGACAAGTACTTCAATGTAGAGTTCGAGTGCACAAATATGTACGTTTTGAGTGCTATGAAGTTTCAAACTATTAATGATACAAAGTGCCACAAATTTTCAAATGTTTCAAAGGATAAAATAATGCAAGAAACTACCATTGTATCGTGGCTTTCTCAAATGGATGTCCCTCAAGATGCCTTTGGAATTGTTGTGGCAAAAATTTTGGAATGTGCTCGTGATATGGTTAGGGCACATAAGAATGTAAGGGTTATTCCTATTCGAGTCAATATTGTCGTTACAAGGGCCAGCGAAGATGAAAGTGATGAAGATGGTGAAGATGGAAGTGATGAAAGGAGTGAAAGTGATGAAGCGGAGGAGGGATTGGAAGTTGAAAAAGAGAAGAACTGTTCTATTTGCTTTGAAAATTTTAATTTTAATGTTGGTGTTCCTATGCCATGTTTGCACTTGTTTCATATAAAATGTATTCGTGGATGGTTAGAGAAAGGTAATTCTTGTCCTTTGTGTAGGCATCAATTGCCAAGTGAATGA 609 0.358 MDEYQIDAYPNFSPVDFDTKNISSCPNDKYFNVEFECTNMYVLSAMKFQTINDTKCHKFSNVSKDKIMQETTIVSWLSQMDVPQDAFGIVVAKILECARDMVRAHKNVRVIPIRVNIVVTRASEDESDEDGEDGSDERSESDEAEEGLEVEKEKNCSICFENFNFNVGVPMPCLHLFHIKCIRGWLEKGNSCPLCRHQLPSE* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0981 202 MobiDBLite consensus disorder prediction 122 149 - -
Tpr6g0981 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 199 - -
Tpr6g0981 202 SMART ring_2 156 195 IPR001841 -
Tpr6g0981 202 SUPERFAMILY RING/U-box 155 200 - -
Tpr6g0981 202 ProSiteProfiles Zinc finger RING-type profile. 156 196 IPR001841 -
Tpr6g0981 202 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 51 199 - -
Tpr6g0981 202 MobiDBLite consensus disorder prediction 125 147 - -
Tpr6g0981 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 202 IPR013083 -
Tpr6g0981 202 Pfam Ring finger domain 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0981 Tpr-Chr6 8784167 8784775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0981 156 202 C3H Transcription Factor Family AT5G01980 52.083 1.79e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0981 K22378 - cam:101499491 205.682