Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0973 ATGTCTTCATCGGAACCTAAATACGAAATCCCACCGGCCCCAACCTACAAGACCCCACCGGCACTAGTAGCATTCACCCTCACCGTTCTCATCCTATGCTTTGTGGCTTTTAGCGTAGTTTATCTTTGCAAGTATTGTTTTGCTAGCGTTTTGCATACTTGGGCCTTACAACGCACGGCCTCAGGATCCCTCGTTCGTCTGTCACCTGAGAGGTCACCTCCTAGGGGACTCGATCTTACCCTTCTAGAAAAATTCCCAACTTTCCTCTATGCCTCCGTAAAAGACCTTCGCAAGGAGAAGAGTTATAGCTTAGAATGTGCCATTTGTTTGCTAGAGTTCGAAGACGATAGCATGCTTCGTCTCCTAACCATTTGTTGCCATGTTTTCCACCAAGAATGTATTGACCTATGGCTTCAATCTCACAAGACATGCCCCGTTTGTCGAACCGACCTTGATTCACCTCCCGACCAAATGTCAAAACACGGCGGGGACAACACCACCACCACCAACAACAATAATGAACAAGAGGGTATGTCATCATTACCGTGCGATGATGACATACACATTGATATTAGAGAAGAGGAAAGAGACAGTGTTGGTGAGATCACTAGAGCTCAAATACATGAAGGTGATCAAAATGTGAGTACAAGCATGAGACAACAAGAAGAACAAAGATTTTCAAGGTGTCATTCAACAGGACATTCTATAGTAATGATTAGAGGTGAAGAAAAAGATGATGAGAAATATACACTGATATTGCCTGAACATGTTATAAGAGGAGGACACAACTGCACAAAGAGTTGTACAAATTACAGTGAGATGACATTGACAGTGCCTACACCTTGTAGTAATTGTGGTTTTATTAAACCACCCTCCTCTTCAATTGCTCAAGCCCAAGAAGCTTGA 906 0.4338 MSSSEPKYEIPPAPTYKTPPALVAFTLTVLILCFVAFSVVYLCKYCFASVLHTWALQRTASGSLVRLSPERSPPRGLDLTLLEKFPTFLYASVKDLRKEKSYSLECAICLLEFEDDSMLRLLTICCHVFHQECIDLWLQSHKTCPVCRTDLDSPPDQMSKHGGDNTTTTNNNNEQEGMSSLPCDDDIHIDIREEERDSVGEITRAQIHEGDQNVSTSMRQQEEQRFSRCHSTGHSIVMIRGEEKDDEKYTLILPEHVIRGGHNCTKSCTNYSEMTLTVPTPCSNCGFIKPPSSSIAQAQEA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0973 301 MobiDBLite consensus disorder prediction 159 179 - -
Tpr6g0973 301 SMART ring_2 106 147 IPR001841 -
Tpr6g0973 301 CDD RING-H2_EL5_like 105 148 - -
Tpr6g0973 301 SUPERFAMILY RING/U-box 82 156 - -
Tpr6g0973 301 Pfam Ring finger domain 105 148 IPR001841 -
Tpr6g0973 301 MobiDBLite consensus disorder prediction 152 183 - -
Tpr6g0973 301 PANTHER RING FINGER DOMAIN-CONTAINING 3 275 - -
Tpr6g0973 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Tpr6g0973 301 PANTHER RING-H2 FINGER PROTEIN ATL29 3 275 - -
Tpr6g0973 301 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0973 Tpr-Chr6 8625521 8626426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0973 20 259 Rapid Response to Elicitors AT2G35000 34.286 7.25e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0973 - - gmx:100815505 343.969