Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0969 ATGGATGAGTCATATCCTCCTAATACATTGGCACAATGTCGAATATGTCATGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTGTGGCACATTGAAGCATGCACATCGAATATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAACTTAAGGGCTATACTGCTCCTCCACCAGCTCCTTTATTCCACTATGGGGGCAATTGGGAAATTCCAAGAATTGGTCTTAATAATAATCAGTTCATAACACTGTTTCCTGCTAATCATGAATTCATGGACCCTAACTTTGAATTTTCAGCACCCTCTACAAGGAGCCTCATGTTCTTCCGCATTGTTGCCATTATTTTGCTAGTGTGGGGAATCACTGGATTAATTGTACCAGTGTATATAATGGTAAAAGCTATTACAACTATCCAACAACTTCAACACCAGGAGCGAAATTCTCTTGTGCAATCTCAGTTGCGTGTAATCCATATTCAGTGA 516 0.3953 MDESYPPNTLAQCRICHDEDEDLNMDTPCSCCGTLKHAHRICVQRWCNEKGDTTCEICQQQLKGYTAPPPAPLFHYGGNWEIPRIGLNNNQFITLFPANHEFMDPNFEFSAPSTRSLMFFRIVAIILLVWGITGLIVPVYIMVKAITTIQQLQHQERNSLVQSQLRVIHIQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0969 171 SMART ringv_2 12 59 IPR011016 GO:0008270
Tpr6g0969 171 SUPERFAMILY RING/U-box 11 62 - -
Tpr6g0969 171 ProSiteProfiles Zinc finger RING-CH-type profile. 5 65 IPR011016 GO:0008270
Tpr6g0969 171 Pfam Protein of unknown function (DUF3675) 64 129 IPR022143 -
Tpr6g0969 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 6 129 - -
Tpr6g0969 171 Pfam RING-variant domain 13 58 IPR011016 GO:0008270
Tpr6g0969 171 CDD RING_CH-C4HC3_MARCH 13 59 - -
Tpr6g0969 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Tpr6g0969 171 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 129 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0969 Tpr-Chr6 8568293 8570763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0969 2 60 C3H Transcription Factor Family AT2G37950 41.935 1.95e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0969 - - lja:Lj1g3v3244520.2 224.942