Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0956 ATGGGTTGGATTCCATGTTCTGGAAATTCAGGAACAAAGAAGAAGATTGTGAAGAAGATGGAAGTTCAAGACAGTCTCACTCGTCAAATTAAAACTACTCCAGCTTCTCAAGGGAAATTGAAGCGGAATTCATCAACAAATTCCAAGGATACATCTAAACATGGGAACAATGAACACATTGCAGCACAAACTTTCTCATTCCGCGAGTTGGCAATTGCAACTAGAAATTTTAGAGCTGAATGTCTTTTGGGGGAGGGAGGCTTTGGTAGAGTATACAAAGGGCATCTCGAAAGTATTAATCAGGTTGTCGCAATCAAGCAACTTGATCGAAATGGTCTCCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATCCTAACCTTGTCAACCTTATCGGTTATTGTGCTGATGGAGATCAGAGGCTTCTAGTTTATGAATATATGTCATTAGGATCCTTGGAAGACCACTTGCATGATTTATCTCCTACCAAGAAACGACTTGACTGGAACATGCGAATGAAAATAGCCGCTGGGGCTGCAAAGGGATTGGAGTATCTACATGACAAAGCTAATCCTCCGGTCATATACCGAGATTTGAAATGCTCCAACATTTTGCTTGGCGAAGGGTATCACCCCAAGTTATCTGATTTTGGCTTGGCCAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACCGGTCAACTTACTCTCAAATCAGATGTTTATAGCTTTGGTGTAGTCCTTCTCGAAATAATTACAGGAAGGAAAGCTATTGACAATTCGAAATCTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCGTTGTTCAAAGATCGAAGGAAATTTTCGCAAATGGCTGATCCTATGCTTCAAGGTCAGTATCCTTCGAGAGGGCTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGTCCGGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTCGCAAAGACATGATCACAATACACAGACGGTCCAAAACTCTCGCCTCTCTCCTGGTACTCCCTCTAGAGTCCGGAGGGGGCGATAA 1152 0.4323 MGWIPCSGNSGTKKKIVKKMEVQDSLTRQIKTTPASQGKLKRNSSTNSKDTSKHGNNEHIAAQTFSFRELAIATRNFRAECLLGEGGFGRVYKGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHDLSPTKKRLDWNMRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRHDHNTQTVQNSRLSPGTPSRVRRGR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0956 383 MobiDBLite consensus disorder prediction 359 383 - -
Tpr6g0956 383 Pfam Protein tyrosine and serine/threonine kinase 81 349 IPR001245 GO:0004672|GO:0006468
Tpr6g0956 383 MobiDBLite consensus disorder prediction 359 375 - -
Tpr6g0956 383 PANTHER OS07G0668900 PROTEIN 1 381 - -
Tpr6g0956 383 MobiDBLite consensus disorder prediction 26 45 - -
Tpr6g0956 383 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0956 383 SUPERFAMILY Protein kinase-like (PK-like) 63 364 IPR011009 -
Tpr6g0956 383 PIRSF ILK 15 369 - -
Tpr6g0956 383 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 381 - -
Tpr6g0956 383 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr6g0956 383 Gene3D Phosphorylase Kinase; domain 1 46 153 - -
Tpr6g0956 383 Gene3D Transferase(Phosphotransferase) domain 1 154 374 - -
Tpr6g0956 383 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Tpr6g0956 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Tpr6g0956 383 MobiDBLite consensus disorder prediction 22 58 - -
Tpr6g0956 383 CDD STKc_IRAK 83 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0956 Tpr-Chr6 8410698 8414178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0956 31 356 Glycoside Hydrolase AT3G07070 67.791 3.04e-166 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tpr6g0956 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0956 - - gmx:100499648 681.789