Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0949 ATGTTGGATCTCAATCTCAACGCTCATTCCGCTTTTGATAACTACACTTTCCCACTCTCCTCCGCCACCGCACAAATGGAAAGCTCCGGCAGCTTTGATTCATCCGTCGTCAACACCGCCGACACTGAAGATTCATCCTCTTACGGCGATGCCTACGCTTACAACTTCGCCATACTCAACAACAACACCAACAACAACAGTTCCGTTGAGAACGGTTCAATCTCCGGTGAACTTCAAGTTCAACACTCCGGCGCCGGTGAATCTGGTGTACGGACAATTCAGCTTTTTCCAGCTAACGAATCTGGATTAATCTCGCCGTCTGAAAATAGAGGATGGATGAAGATGAATTTTCCGTCGGATCATCACGGCGGTGTACCGGAGCATACTGTTGTTGTTGCTCCACGACCACAGCAAGTGAAGAAGAGTCGCCGTGGACCGAGGTCACGAAGCTCGCAGTATCGTGGCGTTACTTTCTACCGGAGAACAGGACGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGACACTGCACATGCTGCAGCAAGAGCTTATGATCGAGCTGCGATCAAGTTTCGTGGAGTTGATGCGGATATTAATTTCAATGTTAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGCTCTAAATACAGGGGAGTTACTCTGCATAAATGTGGAAGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTCGGGCTTTTCGATAGCGAGATAGACGCCGCAAGAGCCTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTGACAAATTTTGAGGCTAGTACTTATGAAGGAGAGTTAATTTCCCATTGTGATAATGCAGATAGCAAGCAGAATCTTGATCTGAACTTAGCTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCAACACAATGGAAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATGCCTGTTGATAAGAGTGTTATGTTTGAGGACTCTGGGTCAAGATCAGTCAATGTTCAGTCACCTTATGGTTTTTCCATATCATCTGAGAATCAACCTCCAGTTTGGAGTGGTAGCAATTACTTTCCCATGTGTAAGGAAAGAGCAATAGAGAATAGGATGGAATCTTCTCCAGTTCCAAATTGGGCATGGCAACTTCAAAGTCCTTATAACAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAAATACAACAATACCAACAGCTGCAGATAGTCAAATTCATTTTGCAAACATGAATTTCCACCCTCATTTTCCTCCTCAAATGACTAACTCCAGCACCATACCCCCTTTCTACTGCAGAAGCTGA 1464 0.4399 MLDLNLNAHSAFDNYTFPLSSATAQMESSGSFDSSVVNTADTEDSSSYGDAYAYNFAILNNNTNNNSSVENGSISGELQVQHSGAGESGVRTIQLFPANESGLISPSENRGWMKMNFPSDHHGGVPEHTVVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIDAARAYDKAAIKCNGREAVTNFEASTYEGELISHCDNADSKQNLDLNLAIAPPSNSDVQMMNMQHNGSGLQVQRSWDDMPVDKSVMFEDSGSRSVNVQSPYGFSISSENQPPVWSGSNYFPMCKERAIENRMESSPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSNTTIPTAADSQIHFANMNFHPHFPPQMTNSSTIPPFYCRS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0949 487 CDD AP2 152 210 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 PRINTS Ethylene responsive element binding protein signature 283 303 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 478 - -
Tpr6g0949 487 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Tpr6g0949 487 Gene3D AP2/ERF domain 243 302 IPR036955 GO:0003700|GO:0006355
Tpr6g0949 487 ProSiteProfiles AP2/ERF domain profile. 244 301 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 SUPERFAMILY DNA-binding domain 243 302 IPR016177 GO:0003677
Tpr6g0949 487 CDD AP2 243 303 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 Pfam AP2 domain 243 293 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 SMART rav1_2 244 307 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 SUPERFAMILY DNA-binding domain 151 210 IPR016177 GO:0003677
Tpr6g0949 487 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Tpr6g0949 487 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0949 Tpr-Chr6 8373767 8376812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0949 130 342 AP2-EREBP Transcription Factor Family AT4G36920 75.234 6.50e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr6g0949 AP2 6.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0949 K09284 - gmx:100797238 639.802