Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0947 ATGTCCGAAGCTCCGGCGAGTCCTGGCGGTGGTAGCCACGAAAGCGGCGAACACAGTCCTCGTTCTAACATCCGTGAACAAGATAGGTTTCTTCCAATTGCTAACATCAGTCGTATCATGAAAAAAGCTCTTCCTGCTAATGGCAAAATTGCTAAAGATGCTAAAGAAACTGTTCAGGAATGTGTTTCTGAGTTCATAAGCTTCATTACTAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGCGATGATTTGCTTTGGGCTATGGCTACTCTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGATGGAGGGTGATACTAAGGGCTCTGCTAAGGGTGACACATCTGCTAAGAAAGATGTTCAACAAGGTTCCAACCCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGAGTTTCTTATGCAAATGCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAATAG 513 0.4425 MSEAPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGDTSAKKDVQQGSNPQLAHQGSFSQGVSYANAQGQHMMVPMQGPE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0947 170 Gene3D Histone, subunit A 17 152 IPR009072 GO:0046982
Tpr6g0947 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Tpr6g0947 170 MobiDBLite consensus disorder prediction 120 150 - -
Tpr6g0947 170 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
Tpr6g0947 170 SUPERFAMILY Histone-fold 27 141 IPR009072 GO:0046982
Tpr6g0947 170 MobiDBLite consensus disorder prediction 1 27 - -
Tpr6g0947 170 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr6g0947 170 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Tpr6g0947 170 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Tpr6g0947 170 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Tpr6g0947 170 MobiDBLite consensus disorder prediction 129 150 - -
Tpr6g0947 170 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0947 Tpr-Chr6 8341725 8346443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0947 1 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.271 2.95e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr6g0947 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0947 K08065 - gmx:100798667 308.145